footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	CTAATTAA (UniPROBE 20160601), PF0061.1.1 (JASPAR 2024), PF0061.1.10 (JASPAR 2024), PF0061.1.15 (JASPAR 2024), PF0061.1.19 (JASPAR 2024), PF0061.1.2 (JASPAR 2024), PF0061.1.20 (JASPAR 2024), PF0061.1.3 (JASPAR 2024), PF0061.1.4 (JASPAR 2024), PF0061.1.5 (JASPAR 2024), MA2174.1.12 (JASPAR 2024)
Organisms:	Mus musculus, Saccharomyces cerevisiae, Homo sapiens, Drosophila melanogaster, Caenorhabditis elegans
Libraries:	UniPROBE 20160601 ¹, JASPAR 2024 ² ¹ Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] ² Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length:	8
Sequence:	CTAATTAA
Type:	Heterodimer
Binding TFs:	UP00224A (Homeobox domain, 'Paired box' domain) UP00127A (Homeobox domain) UP00063A / UP00391A (Homeobox domain) UP00078A (ARID/BRIGHT DNA binding domain) UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00106A (Homeobox domain) UP00108A (Homeobox domain) UP00110A (Homeobox domain) UP00113A (Homeobox domain) UP00115A (Homeobox domain, Homeobox KN domain) UP00116A (Homeobox domain) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00120A (Homeobox domain) UP00123A (Homeobox domain) UP00124A (Homeobox domain) UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00130A (Homeobox domain, Homeobox KN domain) UP00131A (Homeobox domain) UP00132A (Homeobox domain) UP00136A (Homeobox domain, Homeobox KN domain) UP00137A (Homeobox domain) UP00138A (Homeobox domain) UP00139A (Homeobox domain) UP00141A (Homeobox domain) UP00142A (Homeobox domain) UP00144A (Homeobox domain) UP00149A (Homeobox domain) UP00152A (Homeobox domain) UP00154A (Homeobox domain) UP00156A (Homeobox domain) UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00162A (Homeobox domain) UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00169A (Homeobox domain, Homeobox KN domain) UP00170A (Homeobox domain, Homeobox KN domain) UP00171A (Homeobox domain) UP00172A (Homeobox domain, Homeobox KN domain) UP00174A (Homeobox domain) UP00175A (Homeobox domain, Homeobox KN domain) UP00178A (Homeobox domain) UP00179A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00184A (Homeobox domain, Homeobox KN domain) UP00187A (Homeobox domain) UP00188A (Homeobox domain, Homeobox KN domain) UP00189A (Homeobox domain) UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00196A (Homeobox domain) UP00200A (Homeobox domain) UP00201A (Homeobox domain) UP00202A (Homeobox domain) UP00212A (Homeobox domain, Homeobox KN domain) UP00214A (Homeobox domain) UP00215A (Homeobox domain) UP00218A (Homeobox domain) UP00220A (Homeobox domain) UP00221A (Homeobox domain) UP00225A (Homeobox domain) UP00233A (Homeobox domain) UP00237A (Homeobox domain) UP00238A (Homeobox domain) UP00241A (Homeobox domain) UP00243A (Homeobox domain) UP00247A (Homeobox domain, 'Paired box' domain) UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00251A (Homeobox domain) UP00252A (Homeobox domain) UP00253A (Homeobox domain) UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00257A (Homeobox domain) UP00261A (Homeobox domain, Homeobox KN domain) UP00262A (Homeobox domain, Homeobox KN domain) UP00266A (Homeobox domain) UP00268A (Homeobox domain) UP00274A (Homeobox domain) UP00146A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00164A (Homeobox domain) UP00209A (Homeobox domain, Homeobox KN domain) UP00256A (Homeobox domain, Homeobox KN domain) UP00399A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00505A (Homeobox domain) UP00506A (Homeobox domain) UP00507A (Homeobox domain) UP00510A (Homeobox domain) UP00584A (Homeobox domain) UP00584B (Homeobox domain) UP00584C (Homeobox domain) UP00584D (Homeobox domain) UP00584F (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00588A (Homeobox domain) UP00588B (Homeobox domain, Homeobox KN domain) UP00594A (Homeobox domain) UP00594B (Homeobox domain) UP00594C (Homeobox domain) UP00596A (Homeobox domain) UP00596B (Homeobox domain) UP00596C (Homeobox domain) UP00598A (Homeobox domain) UP00598B (Homeobox domain) UP00603A (Homeobox domain) UP00603B (Homeobox domain) UP00603C (Homeobox domain) UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609C (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00610A (Homeobox domain, 'Paired box' domain) UP00610B (Homeobox domain, 'Paired box' domain) UP00610C (Homeobox domain, 'Paired box' domain) UP00610D (Homeobox domain, 'Paired box' domain) UP00611D (Homeobox domain, 'Paired box' domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00619A (Homeobox domain, Homeobox KN domain) UP00619B (Homeobox domain, Homeobox KN domain) UP00619C (Homeobox domain, Homeobox KN domain) UP00623A (Homeobox domain) UP00623B (Homeobox domain) UP00625A (Homeobox domain) UP00625B (Homeobox domain) UP00625C (Homeobox domain) UP00625D (Homeobox domain) UP00626A (Homeobox domain) UP00626C (Homeobox domain) Q18533
Binding Motifs:	UP00200A_2 rrtwATTAATKAykyc UP00063A_1 tkgagbTAATTAry UP00078A_1 sgktTTAATTAAwmtwy UP00105A_1 rmttAATTAATTAadtc UP00106A_1 kwvcryTAATTArkrc UP00108A_1 wawayTAATTAryTsav UP00110A_1 bcrcdaTAATTAcmswc UP00113A_1 CgmrTTAATTAAywawm UP00115A_1 waaayTAATTArykmhs UP00116A_1 wrcmyTAATTArtkswy UP00118A_1 wrtwATTAATkArkyc UP00120A_1 tgmayYAATTRryksrr UP00123A_1 kkmsTAATTAGkgshv UP00124A_1 marsTAATTAgywcAt UP00127A_1 asryTAATTAgyysAk UP00128A_1 swtAaTTAATTArkkyr UP00129A_1 rmyTAATTAATTAaktm UP00130A_1 sdaaTTAATTAAwwmmk UP00131A_1 dscrCTAATTAGysrkt UP00132A_1 ymcmGCTAATTAGckkw UP00136A_1 wvmrYTAATTARygrwr UP00137A_1 wravcTMATKAgykrrw UP00138A_1 vmrgyAATTrsytsAd UP00139A_1 dtbcryYAATTRrtrcw UP00141A_1 csaryTAATTAryratt UP00142A_1 vataaTTAATTAAygsg UP00144A_1 cgmrTTAATTAAtwahy UP00146A_1 vwmswTAATKAGstkgm UP00149A_1 vrkaaTTAATTAAyrsg UP00152A_1 gtscryTAATTArtksw UP00154A_1 kmrmdaTAATTAcmswm UP00156A_1 vmagACyAATTAgykht UP00158A_1 rrwtAATTAATTAwgtc UP00162A_1 wvarcTAATTAgygswc UP00163A_1 wgmmyYAATTRrygrah UP00164A_1 sgmrtTAATTAatwagc UP00167A_1 gsvAAcTAATTArkgc UP00169A_1 rrwwwTTAATTAAtwyb UP00170A_1 mhmaAyymMTTAakwy UP00171A_1 mamAAcyAATTAAktw UP00172A_1 cgmrTTAATTAAkwdac UP00174A_1 amggTAATTAscymAd UP00175A_1 csyayTAATTArtymcy UP00178A_1 cgsryyAATTrrkways UP00179A_1 ttkTATGCWAATkara UP00184A_1 wmmvCTAATTAGCkgtg UP00187A_1 cgcryTAATTArthasc UP00188A_1 sgawTTAATTAAwwwyy UP00189A_1 amgkTAATTAscwmar UP00191A_1 ywkTATGCWAATkara UP00196A_1 grttrtTAATTAackbg UP00200A_1 gmwwATTAATTAmyybg UP00201A_1 wvmrCTAATTAGykshy UP00202A_1 btgarrTAATTAay UP00209A_1 cgmryTAATTArtymcy UP00212A_1 sraaTTAATTAAwwamy UP00214A_1 amgkTAATTAschmat UP00215A_1 asgtTAATTAvcyyag UP00218A_1 bktmAtTAATkAakwm UP00220A_1 wgmrcyAATTrgyGsgr UP00221A_1 yrkmAyTAATTAryrv UP00224A_1 TrayTAATTArtkvac UP00225A_1 cmaTAATTrATTAym UP00233A_1 rvkgTAATTAsmycAg UP00237A_1 cryarTTAATTAAykkg UP00238A_1 gawwwTTAATKAmtkyk UP00241A_1 ytgrgkTAATTAmcst UP00243A_1 hmyvCyAATTrGkbgw UP00247A_1 wsawyTAATTAryysdm UP00248A_1 mgwmyTAATTArkwmda UP00251A_1 wwycryTAATTArtksw UP00252A_1 cgmrtTAATTAatwayt UP00253A_1 wscayYAATTRryssmy UP00254A_1 dtdwrwTAATTArktw UP00256A_1 swrcryTAATTArkkyw UP00257A_1 ckmsyTAATTArtyrds UP00261A_1 kaaaCTAATTAGstwtg UP00262A_1 mgwaTTAATTAAwwahk UP00266A_1 vkaayTAATTAryTast UP00268A_1 cgyddwtTAATTAawksgrm UP00274A_1 ttsmmaYTAATTARwwwmks UP00391A_1 tygmrbTAATTAry UP00399A_1 ywwradwTwTGCAwAwtsarwm UP00063A_2 aarawCbATTArsr UP00078A_2 hmmvrtATcrdrtyk UP00146A_2 rhasATAATGAGstkkc UP00164A_2 kkmkTAATTAmkggmm UP00209A_2 crmrTTAATTAAttgrm UP00256A_2 wmcrCTAATTAGcggwk UP00505A_1 mmtwvasCTAATTAGygrdrct UP00506A_1 amkwgvryyAATTrrcksacyw UP00507A_1 tarcrsCrCyAATTAgygywyy UP00510A_1 myacTgrrcTAATTAscsbrdr UP00584A_1 trhatvsyTAATTArktwtmtt UP00584A_2 aAgdwcgCyAATTrGckmbtgm UP00584B_2 wtwhtddkmTAATTAvmshwkrw UP00584C_1 aakwkcgCTAATTAGybsrygy UP00584C_2 kavwsrsCyAATTrGyysmrka UP00584D_1 Trrkdgbayaattrtwrmtwdw UP00584F_1 amgatrayTAATTArygsbgcm UP00584F_2 mAkrdyrCyAATTrGckrwtgm UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00588A_1 mahrgcGCTAATTAGygcswGm UP00588B_1 tcakvkGyTAATTAgChaAdwma UP00594A_1 gkscscryTAATTArymmgcgg UP00594B_1 rcrwrdsCYAATTRGtkgwwsw UP00594C_1 kkycscryTAATTArtmakcsg UP00594C_2 wmakhtgcyAATTrrcmwrwwhw UP00596A_1 rAawwaATAATmATTAkycwwwr UP00596A_2 kkmbtrstTAATTAakwrtmds UP00596B_1 kkmcgcgTTAATTAAkmmtcgr UP00596B_2 twmmwasyTAATTArtwawadk UP00596C_1 kkcsrmgtTAATTAakmatcgg UP00596C_2 wtmtawGkTAATTAhChhAdwaa UP00598A_1 mctwkrsCTAATTAGagcmssg UP00598A_2 makkcmaACYAATTAdswsdky UP00598B_1 ykyrscmYTAATTAAkmwsckg UP00598B_2 gkcmscryTAATTArkvhkssb UP00603A_1 mtwyaaaAAcCAATTAacwmray UP00603A_2 bwyraaaacYAATTAaywhwmby UP00603B_1 wtwtrtgyAATTAwttaaktysw UP00603B_2 ssgksgcAkYAATTAskmmymya UP00603C_1 awwsydrACYAATTAdsgcmdy UP00603C_2 ydmmayrCyAATTrGtmwtyrs UP00609A_1 ctmwrkTAATCGATTAdckwtc UP00609B_1 kawmktTAATCGATTAmyrrad UP00609C_1 krwmktTAATCGATTActrgmd UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00609H_1 kawmktTAATCGATTAcyksad UP00610A_1 kywsrksskCTAATTArkgcwmT UP00610A_2 aAkwrccyTAATTArmhsmhbw UP00610A_3 wwkrmycaATTAATtwgkkcdc UP00610B_1 twwwkcbkttTAATTAasmasgk UP00610C_1 aakwsswyTAATTArygsacbw UP00610C_2 aakwgswyTAATTArygsacbw UP00610D_1 varwsgcytAATTarkccmwwk UP00610D_2 aakwgshyTAATTArygsackw UP00611D_1 whwydkgkTAATTAkcawawwaw UP00613B_1 aakrbywcTAATTAgwrcymsh UP00616B_1 hkwrythATTATGCRgayakhm UP00616C_1 kgacgyyyTAATTArwcrtcrr UP00616E_1 kgmcgyyyTAATTArwcakcrg UP00618A_1 wwvrybagcTAATTArkgywmt UP00618B_1 wyhcgrgcTAATTAkcycarwaw UP00618C_1 twwmrybagcTAATTArbrywmt UP00619A_1 wAytkTAATywAATTAkyTdag UP00619B_1 rwrtdTwwtyyAATTArkwywaw UP00619C_1 AwgtwTAATyTAATTAwtwkwg UP00623A_1 tyatcggsTAATTAscycAktmr UP00623B_2 whatskGyTAATTAsCycAdtar UP00625A_1 wAgrkkgCTAATTAGbsvyykw UP00625B_1 wAgdkbrCTAATTAGysryhgw UP00625C_1 wtmkmgGcTAATTArCmmAwwaw UP00625D_1 aAkrtsrCTAATTAGcgrthgw UP00626A_1 wtmcryrYTAATTARkrrwgrg UP00626C_1 tmmmamvTTAATTAAkwrtmtg PF0061.1 yTAATTAA MA2174.1 cTAATTAg
Publications:	Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed] Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, PeÃ±a-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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