Main news:
07/01/2025 synced with  RSAT (see blog), previous contents archived at DIGITAL.CSIC
 
07/01/2025 Updated EEADannot with plant motifs and sites manually curated at EEAD-CSIC

19/12/2024 Updated 3d-footprint & interface residues
 
05/01/2024 Added JASPAR 2024 (see blog)

..

09/10/2023 Adopted python3-weblogo & ghostscript

31/05/2023 Updated motif & FASTA downloads after reviewing licenses

07/03/2023 Moved to new server and updated URL; SOAP interface deprecated, details in blog

..

03/03/2022 Updated user manual, see how to build a URL for a motif at our blog

         

         The data are regularly curated from public databases and the literature; interfaces are inferred from the collection of protein-DNA complexes at 3D-footprint:
			
 
			

				
			   total
			   unique
				metazoa 
				plants
			

			

				Transcription Factors
				9976
				7322
				4839
            1256
			

			

				DNA motifs (PSSM)
				17117
				14828
				8893
            2962
			

			

            DNA Binding Sites/Sequences
            68358
            
				
				
         

			
 	

         
footprintDB predicts:
         
    
         
  1. Transcription factors which bind a specific DNA site or motif
    2. 
         
  2. DNA motifs or sites likely to be recognized by a specific DNA-binding protein
    3. 
         

         
         
         

         

         footprintDB working schema
         

         

            

            

            footprintDB Search
            footprintDB Tutorial
            

            

         
         

         

         

      

   

   		
		
				

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.