All
PF13894 - C2H2-type zinc finger
PF00096 - Zinc finger, C2H2 type
PF13465 - Zinc-finger double domain
PF13912 - C2H2-type zinc finger
PF00046 - Homeobox domain
PF00249 - Myb-like DNA-binding domain
PF00010 - Helix-loop-helix DNA-binding domain
PF00105 - Zinc finger, C4 type (two domains)
PF13921 - Myb-like DNA-binding domain
PF00170 - bZIP transcription factor
PF07716 - Basic region leucine zipper
PF00104 - Ligand-binding domain of nuclear hormone receptor
PF12874 - Zinc-finger of C2H2 type
PF05920 - Homeobox KN domain
PF00505 - HMG (high mobility group) box
PF09011 - Domain of unknown function (DUF1898)
PF00250 - Fork head domain
PF00178 - Ets-domain
PF00847 - AP2 domain
PF00320 - GATA zinc finger
PF01352 - KRAB box
PF00157 - Pou domain - N-terminal to homeobox domain
PF00172 - Fungal Zn(2)-Cys(6) binuclear cluster domain
PF00023 - Ankyrin repeat
PF00989 - PAS fold
PF00554 - Rel homology domain (RHD)
PF02946 - GTF2I-like repeat
PF00412 - LIM domain
PF13909 - C2H2-type zinc-finger domain
PF00292 - 'Paired box' domain
PF03165 - MH1 domain
PF00319 - SRF-type transcription factor (DNA-binding and dimerisation domain)
PF02178 - AT hook motif
PF00907 - T-box
PF01833 - IPT/TIG domain
PF12796 - Ankyrin repeats (3 copies)
PF00605 - Interferon regulatory factor transcription factor
PF00651 - BTB/POZ domain
PF02198 - Sterile alpha motif (SAM)/Pointed domain
PF02365 - No apical meristem (NAM) protein
PF08447 - PAS fold
PF02376 - CUT domain
PF03106 - WRKY DNA -binding domain
PF03131 - bZIP Maf transcription factor
PF04082 - Fungal specific transcription factor domain
PF04545 - Sigma-70, region 4
PF02319 - E2F/DP family winged-helix DNA-binding domain
PF02362 - B3 DNA binding domain
PF10401 - Interferon-regulatory factor 3
PF04542 - Sigma-70 region 2
PF08347 - N-terminal CTNNB1 binding
PF13637 - Ankyrin repeats (many copies)
PF00859 - CTF/NF-I family transcription modulation region
PF00447 - HSF-type DNA-binding
PF00870 - P53 DNA-binding domain
PF12756 - C2H2 type zinc-finger (2 copies)
PF13606 - Ankyrin repeat
PF01381 - Helix-turn-helix
PF00853 - Runt domain
PF03826 - OAR domain
PF02173 - pKID domain
PF07710 - P53 tetramerisation motif
PF10524 - Nuclear factor I protein pre-N-terminus
PF00072 - Response regulator receiver domain
PF04539 - Sigma-70 region 3
PF00140 - Sigma-70 factor, region 1.2
PF00352 - Transcription factor TFIID (or TATA-binding protein, TBP)
PF00017 - SH2 domain
PF01017 - STAT protein, all-alpha domain
PF01047 - MarR family
PF02864 - STAT protein, DNA binding domain
PF02257 - RFX DNA-binding domain
PF13857 - Ankyrin repeats (many copies)
PF00751 - DM DNA binding domain
PF02023 - SCAN domain
PF03166 - MH2 domain
PF13837 - Myb/SANT-like DNA-binding domain
PF02701 - Dof domain, zinc finger
PF13463 - Winged helix DNA-binding domain
PF03638 - Tesmin/TSO1-like CXC domain
PF00486 - Transcriptional regulatory protein, C terminal
PF12802 - MarR family
PF00376 - MerR family regulatory protein
PF13411 - MerR HTH family regulatory protein
PF00382 - Transcription factor TFIIB repeat
PF01342 - SAND domain
PF03634 - TCP family transcription factor
PF11851 - Domain of unknown function (DUF3371)
PF00628 - PHD-finger
PF04546 - Sigma-70, non-essential region
PF07527 - Hairy Orange
PF02865 - STAT protein, protein interaction domain
PF01586 - Myogenic Basic domain
PF00196 - Bacterial regulatory proteins, luxR family
PF06507 - Auxin response factor
PF00392 - Bacterial regulatory proteins, gntR family
PF01388 - ARID/BRIGHT DNA binding domain
PF03299 - Transcription factor AP-2
PF00356 - Bacterial regulatory proteins, lacI family
PF12844 - Helix-turn-helix domain
PF04814 - Hepatocyte nuclear factor 1 (HNF-1), N terminus
PF01056 - Myc amino-terminal region
PF12347 - Holliday junction regulator protein family C-terminal repeat
PF01486 - K-box region
PF13426 - PAS domain
PF00165 - Bacterial regulatory helix-turn-helix proteins, AraC family
PF12497 - Estrogen receptor beta
PF12171 - Zinc-finger double-stranded RNA-binding
PF08281 - Sigma-70, region 4
PF00532 - Periplasmic binding proteins and sugar binding domain of LacI family
PF13377 - Periplasmic binding protein-like domain
PF01285 - TEA/ATTS domain family
PF02155 - Glucocorticoid receptor
PF10545 - Alcohol dehydrogenase transcription factor Myb/SANT-like
PF02344 - Myc leucine zipper domain
PF02309 - AUX/IAA family
PF08504 - Runx inhibition domain
PF11569 - Homeodomain leucine-zipper encoding, Homez
PF13873 - Myb/SANT-like DNA-binding domain
PF13412 - Winged helix-turn-helix DNA-binding
PF09271 - LAG1, DNA binding
PF05349 - GATA-type transcription activator, N-terminal
PF13407 - Periplasmic binding protein domain
PF04516 - CP2 transcription factor
PF12403 - Paired-box protein 2 C terminal
PF02892 - BED zinc finger
PF08271 - TFIIB zinc-binding
PF09270 - Beta-trefoil DNA-binding domain
PF07777 - G-box binding protein MFMR
PF13560 - Helix-turn-helix domain
PF03957 - Jun-like transcription factor
PF03110 - SBP domain
PF12284 - Hox protein A13 N terminal
PF00808 - Histone-like transcription factor (CBF/NF-Y) and archaeal histone
PF09316 - C-myb, C-terminal
PF08430 - Forkhead N-terminal region
PF02183 - Homeobox associated leucine zipper
PF12336 - SOX transcription factor
PF00126 - Bacterial regulatory helix-turn-helix protein, lysR family
PF00125 - Core histone H2A/H2B/H3/H4
PF03615 - GCM motif protein
PF02165 - Wilm's tumour protein
PF12232 - Myogenic determination factor 5
PF08279 - HTH domain
PF09354 - HNF3 C-terminal domain
PF04617 - Hox9 activation region
PF14379 - MYB-CC type transfactor, LHEQLE motif
PF09278 - MerR, DNA binding
PF14144 - Seed dormancy control
PF07988 - LMSTEN motif
PF13384 - Homeodomain-like domain
PF14046 - Nuclear receptor repeat
PF05225 - helix-turn-helix, Psq domain
PF12833 - Helix-turn-helix domain
PF02166 - Androgen receptor
PF04589 - RFX1 transcription activation region
PF08383 - Maf N-terminal region
PF03792 - PBC domain
PF07776 - Zinc-finger associated domain (zf-AD)
PF10525 - Engrailed homeobox C-terminal signature domain
PF04812 - Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
PF12310 - Transcription factor protein N terminal
PF01325 - Iron dependent repressor, N-terminal DNA binding domain
PF12444 - Sox developmental protein N terminal
PF08563 - P53 transactivation motif
PF11928 - Domain of unknown function (DUF3446)
PF02008 - CXXC zinc finger domain
PF07647 - SAM domain (Sterile alpha motif)
PF08220 - DeoR-like helix-turn-helix domain
PF02159 - Oestrogen receptor
PF12413 - Homeobox protein distal-less-like N terminal
PF03466 - LysR substrate binding domain
PF02082 - Transcriptional regulator
PF11951 - Fungal specific transcription factor domain
PF06546 - Vertebrate heat shock transcription factor
PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar)
PF03172 - Sp100 domain
PF13545 - Crp-like helix-turn-helix domain
PF12067 - Sox C-terminal transactivation domain
PF11825 - Nuclear/hormone receptor activator site AF-1
PF13923 - Zinc finger, C3HC4 type (RING finger)
PF00612 - IQ calmodulin-binding motif
PF00097 - Zinc finger, C3HC4 type (RING finger)
PF03195 - Protein of unknown function DUF260
PF04621 - PEA3 subfamily ETS-domain transcription factor N terminal domain
PF13443 - Cro/C1-type HTH DNA-binding domain
PF12577 - PPAR gamma N-terminal region
PF02045 - CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
PF12598 - T-box transcription factor
PF00027 - Cyclic nucleotide-binding domain
PF13639 - Ring finger domain
PF00325 - Bacterial regulatory proteins, crp family
PF01852 - START domain
PF01475 - Ferric uptake regulator family
PF02954 - Bacterial regulatory protein, Fis family
PF00531 - Death domain
PF00856 - SET domain
PF11413 - Hypoxia-inducible factor-1
PF14215 - bHLH-MYC and R2R3-MYB transcription factors N-terminal
PF02742 - Iron dependent repressor, metal binding and dimerisation domain
PF00498 - FHA domain
PF00645 - Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
PF08778 - HIF-1 alpha C terminal transactivation domain
PF00271 - Helicase conserved C-terminal domain
PF12045 - Protein of unknown function (DUF3528)
PF04383 - KilA-N domain
PF00313 - 'Cold-shock' DNA-binding domain
PF04731 - Caudal like protein activation region
PF03529 - Otx1 transcription factor
PF03474 - DMRTA motif
PF00134 - Cyclin, N-terminal domain
PF05485 - THAP domain
PF01978 - Sugar-specific transcriptional regulator TrmB
PF03869 - Arc-like DNA binding domain
PF01316 - Arginine repressor, DNA binding domain
PF12533 - Neuronal helix-loop-helix transcription factor
PF02905 - Epstein Barr virus nuclear antigen-1, DNA-binding domain
PF09012 - FeoC like transcriptional regulator
PF01429 - Methyl-CpG binding domain
PF00176 - SNF2 family N-terminal domain
PF01402 - Ribbon-helix-helix protein, copG family
PF06203 - CCT motif
PF00440 - Bacterial regulatory proteins, tetR family
PF01638 - HxlR-like helix-turn-helix
PF13293 - Domain of unknown function (DUF4074)
PF04770 - ZF-HD protein dimerisation region
PF02944 - BESS motif
PF00538 - linker histone H1 and H5 family
PF06445 - GyrI-like small molecule binding domain
PF03551 - Transcriptional regulator PadR-like family
PF02863 - Arginine repressor, C-terminal domain
PF01753 - MYND finger
PF02161 - Progesterone receptor
PF03789 - ELK domain
PF12360 - Paired box protein 7
PF03791 - KNOX2 domain
PF12498 - Basic leucine-zipper C terminal
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF12743 - Oestrogen-type nuclear receptor final C-terminal
PF04873 - Ethylene insensitive 3
PF14259 - RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
PF13744 - Helix-turn-helix domain
PF10533 - Plant zinc cluster domain
PF02312 - Core binding factor beta subunit
PF05687 - Plant protein of unknown function (DUF822)
PF01426 - BAH domain
PF02002 - TFIIE alpha subunit
PF06971 - Putative DNA-binding protein N-terminus
PF03221 - Tc5 transposase DNA-binding domain
PF03790 - KNOX1 domain
PF08879 - WRC
PF03479 - Domain of unknown function (DUF296)
PF03472 - Autoinducer binding domain
PF03859 - CG-1 domain
PF07729 - FCD domain
PF00004 - ATPase family associated with various cellular activities (AAA)
PF02629 - CoA binding domain
PF03288 - Poxvirus D5 protein-like
PF13518 - Helix-turn-helix domain
PF08797 - HIRAN domain
PF12728 - Helix-turn-helix domain
PF02080 - TrkA-C domain
PF04813 - Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
PF02559 - CarD-like/TRCF domain
PF00098 - Zinc knuckle
PF11620 - GA-binding protein alpha chain
PF01022 - Bacterial regulatory protein, arsR family
PF05224 - NDT80 / PhoG like DNA-binding family
PF05044 - Homeobox prospero-like protein (PROX1)
PF02135 - TAZ zinc finger
PF00644 - Poly(ADP-ribose) polymerase catalytic domain
PF03184 - DDE superfamily endonuclease
PF09339 - IclR helix-turn-helix domain
PF06200 - tify domain
PF13913 - zinc-finger of a C2HC-type
PF07638 - ECF sigma factor
PF00874 - PRD domain
PF11914 - Domain of unknown function (DUF3432)
PF03965 - Penicillinase repressor
PF02877 - Poly(ADP-ribose) polymerase, regulatory domain
PF01371 - Trp repressor protein
PF03584 - Herpesvirus ICP4-like protein N-terminal region
PF05406 - WGR domain
PF02671 - Paired amphipathic helix repeat
PF12937 - F-box-like
PF03589 - Antitermination protein
PF08063 - PADR1 (NUC008) domain
PF08517 - Ataxin-1 and HBP1 module (AXH)
PF04504 - Protein of unknown function, DUF573
PF05699 - hAT family dimerisation domain
PF11831 - pre-mRNA splicing factor component
PF14291 - Domain of unknown function (DUF4371)
PF05793 - Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
PF10491 - NLS-binding and DNA-binding and dimerisation domains of Nrf1
PF06018 - CodY GAF-like domain
PF12550 - Transcriptional activator of glycolytic enzymes
PF02373 - JmjC domain, hydroxylase
PF00533 - BRCA1 C Terminus (BRCT) domain
PF08172 - CASP C terminal
PF00158 - Sigma-54 interaction domain
PF07728 - AAA domain (dynein-related subfamily)
PF06217 - GAGA binding protein-like family
PF08558 - Telomere repeat binding factor (TRF)
PF08601 - Transcription factor PAP1
PF06529 - Vertebrate interleukin-3 regulated transcription factor
PF00155 - Aminotransferase class I and II
PF00646 - F-box domain
PF04690 - YABBY protein
PF08448 - PAS fold
PF08880 - QLQ
PF02607 - B12 binding domain
PF07840 - FadR C-terminal domain
PF00455 - DeoR C terminal sensor domain
PF07741 - Brf1-like TBP-binding domain
PF00511 - E2 (early) protein, C terminal
PF03902 - Gal4-like dimerisation domain
PF02200 - STE like transcription factor
PF02909 - Tetracyclin repressor, C-terminal all-alpha domain
PF10492 - Nrf1 activator activation site binding domain
PF08222 - CodY helix-turn-helix domain
PF13920 - Zinc finger, C3HC4 type (RING finger)
PF08299 - Bacterial dnaA protein helix-turn-helix
PF00649 - Copper fist DNA binding domain
PF08670 - MEKHLA domain
PF02270 - Transcription initiation factor IIF, beta subunit
PF04851 - Type III restriction enzyme, res subunit
PF01530 - Zinc finger, C2HC type
PF08753 - NikR C terminal nickel binding domain
PF04997 - RNA polymerase Rpb1, domain 1
PF00439 - Bromodomain
PF04684 - BAF1 / ABF1 chromatin reorganising factor
PF04618 - HD-ZIP protein N terminus
PF04998 - RNA polymerase Rpb1, domain 5
PF09425 - Divergent CCT motif
PF03979 - Sigma-70 factor, region 1.1
PF05000 - RNA polymerase Rpb1, domain 4
PF05269 - Bacteriophage CII protein
PF02437 - SKI/SNO/DAC family
PF12374 - Double-sex mab3 related transcription factor 1
PF04218 - CENP-B N-terminal DNA-binding domain
PF07702 - UTRA domain
PF01698 - Floricaula / Leafy protein
PF13917 - Zinc knuckle
PF02375 - jmjN domain
PF00623 - RNA polymerase Rpb1, domain 2
PF04983 - RNA polymerase Rpb1, domain 3
PF13936 - Helix-turn-helix domain
PF04704 - Zfx / Zfy transcription activation region
PF04845 - PurA ssDNA and RNA-binding protein
PF05001 - RNA polymerase Rpb1 C-terminal repeat
PF10523 - BEN domain
PF08731 - Transcription factor AFT
PF01037 - AsnC family
PF13188 - PAS domain
PF02172 - KIX domain
PF05063 - MT-A70
PF12417 - Zinc finger protein
PF06001 - Domain of Unknown Function (DUF902)
PF12162 - STAT1 TAZ2 binding domain
PF10297 - Minimal binding motif of Hap4 for binding to Hap2/3/5
PF02518 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF13404 - AsnC-type helix-turn-helix domain
PF05142 - Domain of unknown function (DUF702)
PF08214 - Histone acetylation protein
PF09310 - POU domain, class 2, associating factor 1
PF02791 - DDT domain
PF10551 - MULE transposase domain
PF09030 - Creb binding
PF03153 - Transcription factor IIA, alpha/beta subunit
PF08550 - Fungal protein of unknown function (DUF1752)
PF00643 - B-box zinc finger
PF01614 - Bacterial transcriptional regulator
PF00308 - Bacterial dnaA protein
PF08782 - c-SKI Smad4 binding domain
PF00480 - ROK family
PF02805 - Metal binding domain of Ada
PF10416 - Transcription-initiator DNA-binding domain IBD
PF01695 - IstB-like ATP binding protein
PF00270 - DEAD/DEAH box helicase
PF00717 - Peptidase S24-like
PF08769 - Sporulation initiation factor Spo0A C terminal
PF01340 - Met Apo-repressor, MetJ
PF00569 - Zinc finger, ZZ type
PF04023 - FeoA domain
PF02042 - RWP-RK domain
PF03461 - TRCF domain
PF13884 - Chaperone of endosialidase
PF11638 - DnaA N-terminal domain
PF13445 - RING-type zinc-finger, LisH dimerisation motif
PF09607 - Brinker DNA-binding domain
PF00696 - Amino acid kinase family
PF04990 - RNA polymerase Rpb1, domain 7
PF00069 - Protein kinase domain
PF14051 - N-terminal domain of DPF2/REQ.
PF04001 - Transcription factor Vhr1
PF01373 - Glycosyl hydrolase family 14
PF12906 - RING-variant domain
PF09667 - Domain of unknown function (DUF2028)
PF02536 - mTERF
PF04560 - RNA polymerase Rpb2, domain 7
PF04992 - RNA polymerase Rpb1, domain 6
PF07714 - Protein tyrosine kinase
PF07526 - Associated with HOX
PF07724 - AAA domain (Cdc48 subfamily)
PF03867 - Fushi tarazu (FTZ), N-terminal region
PF00156 - Phosphoribosyl transferase domain
PF05464 - Phi-29-like late genes activator (early protein GP4)
PF02001 - Protein of unknown function DUF134
PF00145 - C-5 cytosine-specific DNA methylase
PF00564 - PB1 domain
PF00571 - CBS domain
PF04561 - RNA polymerase Rpb2, domain 2
PF00059 - Lectin C-type domain
PF13658 - Ubiquitin C-terminal hydrolase 37 receptor binding site
PF03123 - CAT RNA binding domain
PF04434 - SWIM zinc finger
PF04297 - Putative helix-turn-helix protein, YlxM / p13 like
PF12998 - Inhibitor of growth proteins N-terminal histone-binding
PF14048 - C-terminal domain of methyl-CpG binding protein 2 and 3
PF04563 - RNA polymerase beta subunit
PF12407 - Homeobox protein
PF13900 - Putative binding domain
PF13621 - Cupin-like domain
PF03459 - TOBE domain
PF12678 - RING-H2 zinc finger
PF09197 - Rap1, DNA-binding
PF06056 - Putative ATPase subunit of terminase (gpP-like)
PF12047 - Cytosine specific DNA methyltransferase replication foci domain
PF08828 - Doublesex dimerisation domain
PF09237 - GAGA factor
PF04565 - RNA polymerase Rpb2, domain 3
PF03754 - Domain of unknown function (DUF313)
PF06573 - Churchill protein
PF03101 - FAR1 DNA-binding domain
PF02311 - AraC-like ligand binding domain
PF06839 - GRF zinc finger
PF04566 - RNA polymerase Rpb2, domain 4
PF00405 - Transferrin
PF00665 - Integrase core domain
PF00622 - SPRY domain
PF01428 - AN1-like Zinc finger
PF12851 - Oxygenase domain of the 2OGFeDO superfamily
PF08360 - QacR-like protein, C-terminal region
PF04433 - SWIRM domain
PF00562 - RNA polymerase Rpb2, domain 6
PF04567 - RNA polymerase Rpb2, domain 5
PF00400 - WD domain, G-beta repeat
PF02796 - Helix-turn-helix domain of resolvase
PF09026 - Centromere protein B dimerisation domain
PF12188 - Signal transducer and activator of transcription 2 C terminal
PF03514 - GRAS family transcription factor
PF02463 - RecF/RecN/SMC N terminal domain
PF01982 - Domain of unknown function DUF120
PF00850 - Histone deacetylase domain
PF08781 - Transcription factor DP
PF08513 - LisH
PF01726 - LexA DNA binding domain
PF08529 - NusA N-terminal domain
PF13456 - Reverse transcriptase-like
PF06470 - SMC proteins Flexible Hinge Domain
PF00106 - short chain dehydrogenase
PF10380 - Transcription factor CRF1
PF12031 - Domain of unknown function (DUF3518)
PF03930 - Recombinase Flp protein N-terminus
PF12706 - Beta-lactamase superfamily domain
PF13771 - PHD-like zinc-binding domain
PF13887 - Myelin gene regulatory factor -C-terminal domain 1
PF00171 - Aldehyde dehydrogenase family
PF13934 - Nuclear pore complex assembly
PF01412 - Putative GTPase activating protein for Arf
PF08671 - Anti-repressor SinI
PF04014 - Antidote-toxin recognition MazE
PF09514 - SSXRD motif
PF03914 - CBF/Mak21 family
PF13434 - L-lysine 6-monooxygenase (NADPH-requiring)
PF00211 - Adenylate and Guanylate cyclase catalytic domain
PF05247 - Flagellar transcriptional activator (FlhD)
PF03610 - PTS system fructose IIA component
PF13401 - AAA domain
PF12116 - Stage III sporulation protein D
PF11262 - Transcription factor/nuclear export subunit protein 2
PF03661 - Uncharacterised protein family (UPF0121)
PF13184 - NusA-like KH domain
PF13596 - PAS domain
PF13304 - AAA domain
PF04309 - Glycerol-3-phosphate responsive antiterminator
PF00561 - alpha/beta hydrolase fold
PF05202 - Recombinase Flp protein
PF11905 - Domain of unknown function (DUF3425)
PF00512 - His Kinase A (phospho-acceptor) domain
PF13691 - Family description
PF13832 - PHD-zinc-finger like domain
PF00381 - PTS HPr component phosphorylation site
PF13358 - DDE superfamily endonuclease
PF13919 - Transcriptional enhancer, Asx-hm domain
PF00226 - DnaJ domain
PF01145 - SPFH domain / Band 7 family
PF13888 - Myelin gene regulatory factor C-terminal domain 2
PF01619 - Proline dehydrogenase
PF09048 - Cro
PF13775 - Domain of unknown function (DUF4171)
PF05495 - CHY zinc finger
PF13738 - Pyridine nucleotide-disulphide oxidoreductase
PF00481 - Protein phosphatase 2C
PF08362 - YcdC-like protein, C-terminal region
PF01247 - Ribosomal protein L35Ae
PF02928 - C5HC2 zinc finger
PF11732 - Transcription- and export-related complex subunit
PF01878 - EVE domain
PF08243 - SPT2 chromatin protein
PF07180 - Protein of unknown function (DUF1401)
PF12165 - Domain of unknown function (DUF3594)
PF12695 - Alpha/beta hydrolase family
PF01433 - Peptidase family M1
PF00657 - GDSL-like Lipase/Acylhydrolase
PF05347 - Complex 1 protein (LYR family)
PF13551 - Winged helix-turn helix
PF12840 - Helix-turn-helix domain
PF08587 - Ubiquitin associated domain (UBA)
PF03444 - Winged helix-turn-helix transcription repressor, HrcA DNA-binding
PF12431 - Transcriptional regulator
PF10318 - Serpentine type 7TM GPCR chemoreceptor Srh
PF10330 - Putative Sin3 binding protein
PF00108 - Thiolase, N-terminal domain
PF12269 - CpG binding protein zinc finger C terminal domain
PF13556 - PucR C-terminal helix-turn-helix domain
PF08429 - PLU-1-like protein
PF00641 - Zn-finger in Ran binding protein and others
PF06464 - DMAP1-binding Domain
PF00491 - Arginase family
PF12697 - Alpha/beta hydrolase family
PF05847 - Nucleopolyhedrovirus late expression factor 3 (LEF-3)
PF00816 - H-NS histone family
PF02186 - TFIIE beta subunit core domain
PF12727 - PBP superfamily domain
PF04640 - PLATZ transcription factor
PF13232 - Complex1_LYR-like
PF13589 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF03909 - BSD domain
PF01369 - Sec7 domain
PF02482 - Sigma 54 modulation protein / S30EA ribosomal protein
PF07739 - TipAS antibiotic-recognition domain
PF02803 - Thiolase, C-terminal domain
PF01399 - PCI domain
PF01232 - Mannitol dehydrogenase Rossmann domain
PF01590 - GAF domain
PF04689 - DNA binding protein S1FA
PF12157 - Protein of unknown function (DUF3591)
PF07496 - CW-type Zinc Finger
PF09606 - ARC105 or Med15 subunit of Mediator complex non-fungal
PF01408 - Oxidoreductase family, NAD-binding Rossmann fold
PF01118 - Semialdehyde dehydrogenase, NAD binding domain
PF12783 - Guanine nucleotide exchange factor in Golgi transport N-terminal
PF00115 - Cytochrome C and Quinol oxidase polypeptide I
PF00508 - E2 (early) protein, N terminal
PF08075 - NOPS (NUC059) domain
PF00367 - phosphotransferase system, EIIB
PF05764 - YL1 nuclear protein
PF08535 - KorB domain
PF01035 - 6-O-methylguanine DNA methyltransferase, DNA binding domain
PF03126 - Plus-3 domain
PF09182 - Bacterial purine repressor, N-terminal
PF11626 - Rap1 - C terminal domain
PF12907 - Zinc-binding
PF00013 - KH domain
PF08125 - Mannitol dehydrogenase C-terminal domain
PF04441 - Poxvirus early transcription factor (VETF), large subunit
PF13185 - GAF domain
PF03326 - Herpesvirus transcription activation factor (transactivator)
PF13516 - Leucine Rich repeat
PF08618 - Transcription factor Opi1
PF03477 - ATP cone domain
PF06640 - P protein C-terminus
PF01529 - DHHC palmitoyltransferase
PF08359 - YsiA-like protein, C-terminal region
PF01286 - XPA protein N-terminal
PF13727 - CoA-binding domain
PF02774 - Semialdehyde dehydrogenase, dimerisation domain
PF00583 - Acetyltransferase (GNAT) family
PF03798 - TLC domain
PF02378 - Phosphotransferase system, EIIC
PF08265 - YL1 nuclear protein C-terminal domain
PF00252 - Ribosomal protein L16p/L10e
PF13836 - Domain of unknown function (DUF4195)
PF01585 - G-patch domain
PF00216 - Bacterial DNA-binding protein
PF02338 - OTU-like cysteine protease
PF04769 - Mating-type protein MAT alpha 1
PF04182 - B-block binding subunit of TFIIIC
PF09596 - MamL-1 domain
PF13014 - KH domain
PF00672 - HAMP domain
PF13492 - GAF domain
PF02081 - Tryptophan RNA-binding attenuator protein
PF05964 - F/Y-rich N-terminus
PF11657 - Transcriptional activator TraM
PF05181 - XPA protein C-terminus
PF00929 - Exonuclease
PF04768 - Protein of unknown function (DUF619)
PF00070 - Pyridine nucleotide-disulphide oxidoreductase
PF09337 - His(2)-Cys(2) zinc finger
PF00246 - Zinc carboxypeptidase
PF00132 - Bacterial transferase hexapeptide (six repeats)
PF12656 - DExH-box splicing factor binding site
PF02870 - 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
PF00575 - S1 RNA binding domain
PF02829 - 3H domain
PF02496 - ABA/WDS induced protein
PF05848 - Firmicute transcriptional repressor of class III stress genes (CtsR)
PF07730 - Histidine kinase
PF11789 - Zinc-finger of the MIZ type in Nse subunit
PF00753 - Metallo-beta-lactamase superfamily
PF02608 - Basic membrane protein
PF05965 - F/Y rich C-terminus
PF08662 - Eukaryotic translation initiation factor eIF2A
PF00627 - UBA/TS-N domain
PF07707 - BTB And C-terminal Kelch
PF00536 - SAM domain (Sterile alpha motif)
PF11785 - Aft1 osmotic stress response (OSM) domain
PF07992 - Pyridine nucleotide-disulphide oxidoreductase
PF07334 - Interferon-induced 35 kDa protein (IFP 35) N-terminus
PF10994 - Protein of unknown function (DUF2817)
PF13867 - Sin3 binding region of histone deacetylase complex subunit SAP30
PF01628 - HrcA protein C terminal domain
PF01078 - Magnesium chelatase, subunit ChlI
PF01637 - Archaeal ATPase
PF12041 - Transcriptional regulator DELLA protein N terminal
PF12464 - Maltose acetyltransferase
PF12610 - Suppressor of cytokine signalling