DNA Binding Motif
| Accessions: | UP00215A_1 (UniPROBE 20160601) |
| Names: | Not Available, Vax1, ventral anterior homeobox containing gene 1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | asgtTAATTAvcyyag |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.50 0.24 0.18 0.08 a 02 0.19 0.34 0.33 0.13 s 03 0.22 0.13 0.53 0.12 g 04 0.16 0.15 0.15 0.54 t 05 0.01 0.12 0 0.87 T 06 0.89 0.10 0 0.01 A 07 0.96 0.01 0 0.02 A 08 0.02 0 0.01 0.96 T 09 0.01 0 0.10 0.89 T 10 0.87 0 0.12 0.01 A 11 0.35 0.25 0.34 0.06 v 12 0.12 0.53 0.13 0.22 c 13 0.19 0.37 0.09 0.35 y 14 0.23 0.40 0.12 0.26 y 15 0.65 0.08 0.13 0.15 a 16 0.20 0.10 0.51 0.19 g |
| Binding TFs: | UP00215A (Homeobox domain) |
| Binding Sites: | GGTAATTA AATAATTA ACTAATTA AGTAATTA ATAATTAA ATAATTAC ATAATTAG ATTAATTA CCTAATTA CTAATTAA CTAATTAG CTCATTAA CTTAATTA GATAATTA GCTAATTA GTAATTAA GTAATTAC GTCATTAA GTTAATTA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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