DNA Binding Motif
| Accessions: | UP00225A_1 (UniPROBE 20160601) |
| Names: | H2.0-like homeo box 1 (Drosophila), Hlx1, Homeobox protein HLX1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 15 |
| Consensus: | cmaTAATTrATTAym |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.18 0.49 0.16 0.17 c 02 0.27 0.44 0.13 0.16 m 03 0.45 0.22 0.16 0.17 a 04 0.07 0.13 0.05 0.75 T 05 0.76 0.08 0.05 0.11 A 06 0.71 0.01 0.07 0.20 A 07 0.04 0.06 0.02 0.88 T 08 0.16 0.12 0.03 0.69 T 09 0.63 0.03 0.25 0.09 r 10 0.88 0.02 0.06 0.04 A 11 0.20 0.07 0.01 0.71 T 12 0.11 0.05 0.08 0.76 T 13 0.75 0.05 0.13 0.07 A 14 0.16 0.41 0.15 0.28 y 15 0.42 0.27 0.09 0.22 m |
| Binding TFs: | UP00225A (Homeobox domain) |
| Binding Sites: | AATAATAA AATAATTA AATTAATA AATTATTA ACTAATTA ATAATAAT ATAATTAA ATAATTAC ATAATTAG ATTAATGA ATTAATTA CAATAAAA CATAATTA CTAATTAA CTAATTAG CTCATTAA GTCATTAA GTTAATTA TAATATTA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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