DNA Binding Motif
| Accessions: | UP00123A_1 (UniPROBE 20160601) |
| Names: | Hlxb9, homeobox gene HB9, Homeobox protein HB9, MNR2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | kkmsTAATTAGkgshv |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.12 0.24 0.37 0.27 k 02 0.14 0.21 0.30 0.35 k 03 0.56 0.25 0.17 0.02 m 04 0.11 0.39 0.38 0.12 s 05 0.01 0.08 0 0.91 T 06 0.97 0.02 0 0 A 07 0.98 0 0.01 0.01 A 08 0.01 0.01 0 0.98 T 09 0 0 0.02 0.97 T 10 0.91 0 0.08 0.01 A 11 0.08 0.16 0.68 0.08 G 12 0.02 0.17 0.25 0.56 k 13 0.17 0.09 0.59 0.15 g 14 0.23 0.27 0.33 0.17 s 15 0.25 0.35 0.11 0.29 h 16 0.29 0.30 0.34 0.07 v |
| Binding TFs: | UP00123A (Homeobox domain) |
| Binding Sites: | GGTAATTA AATAATTA ACTAATTA AGTAATTA ATAATTAC ATAATTAG ATTAATTA CGTAATTA CTAATTAA CTAATTAC CTAATTAG CTTAATTA GATAATTA GCTAATTA GTAATTAA GTAATTAC GTTAATTA TAATTACA TAATTATA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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