Transcription Factor
| Accessions: | UP00506A (UniPROBE 20160601) |
| Names: | CG6570, Dmel\CG6570, Ladybird late, Lbl, nkch4 |
| Organisms: | Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | Ladybird late |
| Length: | 138 |
| Pfam Domains: | 37-93 Homeobox domain |
| Sequence: (in bold interface residues) | 1 DTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKY 60 61 LSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDVQCEKMSANQSFLKNVNDL 120 121 TILKTRPVSRSQSLAPQP |
| Interface Residues: | 36, 37, 38, 39, 40, 78, 79, 81, 82, 85, 86, 89, 90, 93 |
| 3D-footprint Homologues: | 5zfz_A, 4j19_B, 1puf_A, 3cmy_A, 1fjl_B, 6a8r_A, 3d1n_M, 1ig7_A, 2h1k_B, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 1jgg_B, 7q3o_C, 6es3_K, 2ld5_A, 5zjt_E, 2hdd_A, 7psx_B, 5hod_A, 3rkq_B, 2r5y_A, 1puf_B, 2hos_A, 1b72_A, 5jlw_D, 4cyc_A, 4xrs_G, 3l1p_A, 3a01_E, 6m3d_C, 5flv_I, 1e3o_C, 1le8_A, 2xsd_C, 7xrc_C, 8g87_X, 4qtr_D, 4xrm_B, 1o4x_A, 1du0_A |
| Binding Motifs: | UP00506A_1 amkwgvryyAATTrrcksacyw |
| Binding Sites: | ACCAATTA ACTAATTA ATAATTAG ATAATTGG CCAATTAA CCAATTAG CCCAATTA CCTAATTA CCTCATTA CTAATTAA CTAATTAG CTCATTAA GCCAATTA GCTAATTA TAATTAGA TAATTGGA TTAATTAA CCTCGTTA CCTTGTTA CTTGTTAA |
| Publications: | Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM. Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity. Development 139:1164-74 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.