DNA Binding Motif
| Accessions: | UP00063A_2 (UniPROBE 20160601) |
| Names: | homeo box A3, Homeobox protein Hox-A3, Hox-1.5, Hoxa-3, Hoxa3, Mo-10 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | aarawCbATTArsr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.57 0.14 0.16 0.13 a 02 0.51 0.21 0.07 0.20 a 03 0.55 0.05 0.27 0.13 r 04 0.59 0.15 0.06 0.20 a 05 0.32 0.18 0.19 0.31 w 06 0.15 0.75 0.10 0.01 C 07 0.02 0.34 0.32 0.33 b 08 0.86 0.07 0.04 0.03 A 09 0.05 0.02 0.02 0.92 T 10 0.09 0.08 0.01 0.82 T 11 0.86 0.02 0.02 0.09 A 12 0.48 0.05 0.32 0.14 r 13 0.15 0.28 0.42 0.15 s 14 0.26 0.14 0.48 0.11 r |
| Binding TFs: | UP00063A (Homeobox domain) |
| Binding Sites: | GGTAATTA AATAATTA ACTAATTA AGTAATTA ATAATTAC ATTAATTA CTAATTAA CTAATTAC CTAATTAG CTCATTAA CTTAATTA GCTAATTA GTAATTAA GTAATTAC GTCATTAA GTTAATGA GTTAATTA TAATTAAA TAATTACA TTAATTAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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