DNA Binding Motif
| Accessions: | UP00137A_1 (UniPROBE 20160601) |
| Names: | homeo box B3, Homeobox protein Hox-B3, Hox-2.7, Hoxb-3, Hoxb3, MH-23 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | wravcTMATKAgykrrw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.38 0.05 0.05 0.52 w 02 0.29 0.13 0.52 0.06 r 03 0.55 0.20 0.13 0.12 a 04 0.26 0.27 0.32 0.15 v 05 0.08 0.57 0.20 0.15 c 06 0.01 0.11 0 0.88 T 07 0.74 0.26 0 0 M 08 0.98 0 0 0.01 A 09 0.01 0 0 0.98 T 10 0 0 0.26 0.74 K 11 0.88 0 0.11 0.01 A 12 0.15 0.20 0.57 0.08 g 13 0.05 0.34 0.12 0.49 y 14 0.19 0.15 0.30 0.36 k 15 0.32 0.23 0.38 0.06 r 16 0.31 0.12 0.40 0.18 r 17 0.41 0.14 0.20 0.26 w |
| Binding TFs: | UP00137A (Homeobox domain) |
| Binding Sites: | GGTAATTA ACTAATGA ACTAATTA AGTAATTA ATAATTAA ATTAATGA ATTAATTA CCTAATTA CTAATTAA CTAATTAC CTCATTAA CTTAATTA GATAATTA GCTAATTA GTAATTAA GTAATTAC GTCATTAA GTTAATTA TAATTACA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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