DNA Binding Motif
| Accessions: | UP00171A_1 (UniPROBE 20160601) |
| Names: | homeo box, Homeobox protein MSX-3, msh-like 3, Msx3 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | mamAAcyAATTAAktw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.32 0.35 0.23 0.10 m 02 0.60 0.13 0.16 0.10 a 03 0.40 0.29 0.10 0.21 m 04 0.75 0.05 0.13 0.06 A 05 0.77 0.09 0.09 0.05 A 06 0.04 0.67 0.19 0.10 c 07 0 0.52 0 0.47 y 08 0.99 0 0.01 0 A 09 0.99 0.01 0 0 A 10 0.01 0 0 0.99 T 11 0.01 0.01 0 0.98 T 12 0.99 0 0.01 0.01 A 13 0.70 0.03 0.15 0.12 A 14 0.18 0.18 0.30 0.33 k 15 0.22 0.22 0.18 0.37 t 16 0.31 0.21 0.10 0.38 w |
| Binding TFs: | UP00171A (Homeobox domain) |
| Binding Sites: | GGTAATTA AATAATTA AATTAATT ACCAATTA ACTAATTA AGCAATTA AGTAATTA ATAATTAC ATAATTAG ATAATTGG ATTAATTA CCAATTAA CCAATTAG CTAATTAA CTAATTAG GCAATTAA GCTAATTA GTTAATTA TAATTGCA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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