DNA Binding Motif
| Accessions: | UP00596A_2 (UniPROBE 20160601) |
| Names: | cp19, Homeobox protein CP19, Homeobox protein Hox-3E, homeobox protein Hox-C4, HOX3, HOX3E, HOXC4_REF_R2 |
| Organisms: | Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | kkmbtrstTAATTAakwrtmds |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.13 0.15 0.37 0.35 k 02 0.20 0.22 0.30 0.28 k 03 0.38 0.27 0.21 0.14 m 04 0.16 0.32 0.26 0.27 b 05 0.19 0.22 0.16 0.43 t 06 0.29 0.18 0.39 0.14 r 07 0.24 0.35 0.34 0.07 s 08 0.11 0.11 0.11 0.67 t 09 0.02 0.11 0 0.87 T 10 0.94 0.06 0 0 A 11 0.97 0.01 0 0.01 A 12 0.01 0 0.01 0.97 T 13 0 0 0.06 0.94 T 14 0.87 0 0.11 0.02 A 15 0.67 0.11 0.11 0.11 a 16 0.06 0.21 0.39 0.34 k 17 0.27 0.19 0.23 0.30 w 18 0.28 0.24 0.28 0.20 r 19 0.22 0.18 0.24 0.36 t 20 0.29 0.45 0.07 0.19 m 21 0.38 0.10 0.25 0.27 d 22 0.12 0.34 0.32 0.22 s |
| Binding TFs: | UP00596A (Homeobox domain) |
| Binding Sites: | GGTAATTA ACTAATTA AGTAATTA ATAATTAA ATAATTAC ATAATTAG ATTAATTA CATAATTA CTAATTAA CTAATTAC CTAATTAG CTTAATTA GATAATTA GCTAATTA GTAATTAA GTAATTAC GTTAATGA GTTAATTA TAATTACA TTAATTAA |
| Publications: | Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science 351:1450-4 (2016). [Pubmed] |
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