DNA Binding Site

						

			
Accessions: CATAATTA (UniPROBE 20160601)

			
Organisms: Mus musculus, Drosophila melanogaster, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: CATAATTA
Type: Heterodimer
Binding TFs: UP00263A (Homeobox domain)
UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00106A (Homeobox domain)
UP00108A (Homeobox domain)
UP00110A (Homeobox domain)
UP00126A (Homeobox domain)
UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00130A (Homeobox domain, Homeobox KN domain)
UP00154A (Homeobox domain)
UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00188A (Homeobox domain, Homeobox KN domain)
UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00204A (Homeobox domain)
UP00206A (Homeobox domain)
UP00211A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00225A (Homeobox domain)
UP00237A (Homeobox domain)
UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00257A (Homeobox domain)
UP00260A (Homeobox domain)
UP00261A (Homeobox domain, Homeobox KN domain)
UP00146A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00512A (Homeobox domain)
UP00584D (Homeobox domain)
UP00584E (Homeobox domain)
UP00589B (Fork head domain)
UP00594D (Homeobox domain)
UP00595A (Homeobox domain)
UP00595B (Homeobox domain)
UP00595C (Homeobox domain)
UP00596A (Homeobox domain)
UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00610B (Homeobox domain, 'Paired box' domain)
UP00611A (Homeobox domain, 'Paired box' domain)
UP00611D (Homeobox domain, 'Paired box' domain)
UP00614A (Homeobox domain)
UP00614B (Homeobox domain)
UP00614E (Homeobox domain)
UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00623A (Homeobox domain)
UP00624A (Homeobox domain)
UP00624B (Homeobox domain)
UP00625C (Homeobox domain)
UP00626C (Homeobox domain)
UP00627F (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Motifs: UP00105A_1 rmttAATTAATTAadtc
UP00106A_1 kwvcryTAATTArkrc
UP00108A_1 wawayTAATTAryTsav
UP00110A_1 bcrcdaTAATTAcmswc
UP00126A_1 vrdrYAATTRbhymag
UP00128A_1 swtAaTTAATTArkkyr
UP00129A_1 rmyTAATTAATTAaktm
UP00130A_1 sdaaTTAATTAAwwmmk
UP00146A_1 vwmswTAATKAGstkgm
UP00154A_1 kmrmdaTAATTAcmswm
UP00158A_1 rrwtAATTAATTAwgtc
UP00188A_1 sgawTTAATTAAwwwyy
UP00191A_1 ywkTATGCWAATkara
UP00204A_1 wdsmaCYAATTRGtgbw
UP00206A_1 stakTAATTAmtkshr
UP00211A_1 wardTATGCATAwtdwa
UP00225A_1 cmaTAATTrATTAym
UP00237A_1 cryarTTAATTAAykkg
UP00248A_1 mgwmyTAATTArkwmda
UP00254A_1 dtdwrwTAATTArktw
UP00257A_1 ckmsyTAATTArtyrds
UP00260A_1 yrarkTAATTAmtwamw
UP00261A_1 kaaaCTAATTAGstwtg
UP00263A_1 wsykGyAATTAAtarw
UP00146A_2 rhasATAATGAGstkkc
UP00512A_1 aawraarGGTAATTAmydkwkw
UP00584D_1 Trrkdgbayaattrtwrmtwdw
UP00584E_2 wymdwkgkTAATTAwcmwatwaw
UP00589B_1 rawscwTAwrTAAACAaTawka
UP00594D_1 yagmhskaymwraawmsmcwaw
UP00595A_1 TdanrbbrTAATTAytrywawww
UP00595A_2 ttmyywrrTAATTAyyawtwwA
UP00595B_1 wamktwTAATywATTAtartttt
UP00595B_2 ttmyyargTAATTAcydwtwwA
UP00595C_1 TwasksyATAATTAtwGgtwkdr
UP00595C_2 aakwywATaTATAyATwwhamw
UP00596A_2 kkmbtrstTAATTAakwrtmds
UP00609H_1 kawmktTAATCGATTAcyksad
UP00610B_1 twwwkcbkttTAATTAasmasgk
UP00611A_2 tymwakgkTAATTArcatdwwmw
UP00611D_1 whwydkgkTAATTAkcawawwaw
UP00614A_1 tkcrwkrstrATyagyaaawwaa
UP00614B_1 wsvgakssTAATTAgsmawwwmw
UP00614E_1 wbmrwkgvtrATyakcmwwwwmw
UP00616A_1 ykwrytwATTATGCAkaywkhm
UP00616B_1 hkwrythATTATGCRgayakhm
UP00618A_1 wwvrybagcTAATTArkgywmt
UP00618B_1 wyhcgrgcTAATTAkcycarwaw
UP00618C_1 twwmrybagcTAATTArbrywmt
UP00623A_2 wtakcggsYAATTRscymAdwar
UP00624A_1 wwmdwkgbTAATTAkcmawwawa
UP00624B_1 trvgwbgsTaATtAgcmwawwmw
UP00625C_1 wtmkmgGcTAATTArCmmAwwaw
UP00626C_1 tmmmamvTTAATTAAkwrtmtg
UP00627F_1 TwtTwmwATAmAwATAAwwtwkG
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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