DNA Binding Site
| Accessions: | CTAATTAC (UniPROBE 20160601), MA2174.1.15 (JASPAR 2024), MA2174.1.6 (JASPAR 2024) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CTAATTAC |
| Type: | Heterodimer |
| Binding TFs: | UP00127A (Homeobox domain) UP00063A / UP00391A (Homeobox domain) UP00108A (Homeobox domain) UP00123A (Homeobox domain) UP00124A (Homeobox domain) UP00131A (Homeobox domain) UP00132A (Homeobox domain) UP00136A (Homeobox domain, Homeobox KN domain) UP00137A (Homeobox domain) UP00139A (Homeobox domain) UP00142A (Homeobox domain) UP00162A (Homeobox domain) UP00174A (Homeobox domain) UP00184A (Homeobox domain, Homeobox KN domain) UP00189A (Homeobox domain) UP00201A (Homeobox domain) UP00214A (Homeobox domain) UP00220A (Homeobox domain) UP00230A (Homeobox domain) UP00233A (Homeobox domain) UP00237A (Homeobox domain) UP00241A (Homeobox domain) UP00251A (Homeobox domain) UP00253A (Homeobox domain) UP00257A (Homeobox domain) UP00261A (Homeobox domain, Homeobox KN domain) UP00266A (Homeobox domain) UP00256A (Homeobox domain, Homeobox KN domain) UP00505A (Homeobox domain) UP00507A (Homeobox domain) UP00510A (Homeobox domain) UP00584A (Homeobox domain) UP00584C (Homeobox domain) UP00584F (Homeobox domain) UP00588A (Homeobox domain) UP00588B (Homeobox domain, Homeobox KN domain) UP00594C (Homeobox domain) UP00596A (Homeobox domain) UP00596B (Homeobox domain) UP00610A (Homeobox domain, 'Paired box' domain) UP00614A (Homeobox domain) UP00614B (Homeobox domain) UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00619A (Homeobox domain, Homeobox KN domain) UP00623A (Homeobox domain) UP00623B (Homeobox domain) UP00624A (Homeobox domain) UP00624B (Homeobox domain) UP00625A (Homeobox domain) UP00625B (Homeobox domain) UP00625C (Homeobox domain) UP00625D (Homeobox domain) Q18533 |
| Binding Motifs: | UP00063A_1 tkgagbTAATTAry UP00108A_1 wawayTAATTAryTsav UP00123A_1 kkmsTAATTAGkgshv UP00124A_1 marsTAATTAgywcAt UP00127A_1 asryTAATTAgyysAk UP00131A_1 dscrCTAATTAGysrkt UP00132A_1 ymcmGCTAATTAGckkw UP00136A_1 wvmrYTAATTARygrwr UP00137A_1 wravcTMATKAgykrrw UP00139A_1 dtbcryYAATTRrtrcw UP00142A_1 vataaTTAATTAAygsg UP00162A_1 wvarcTAATTAgygswc UP00174A_1 amggTAATTAscymAd UP00184A_1 wmmvCTAATTAGCkgtg UP00189A_1 amgkTAATTAscwmar UP00201A_1 wvmrCTAATTAGykshy UP00214A_1 amgkTAATTAschmat UP00220A_1 wgmrcyAATTrgyGsgr UP00230A_1 ssrgyAATTrsykmts UP00233A_1 rvkgTAATTAsmycAg UP00237A_1 cryarTTAATTAAykkg UP00241A_1 ytgrgkTAATTAmcst UP00251A_1 wwycryTAATTArtksw UP00253A_1 wscayYAATTRryssmy UP00256A_1 swrcryTAATTArkkyw UP00257A_1 ckmsyTAATTArtyrds UP00261A_1 kaaaCTAATTAGstwtg UP00266A_1 vkaayTAATTAryTast UP00391A_1 tygmrbTAATTAry UP00063A_2 aarawCbATTArsr UP00256A_2 wmcrCTAATTAGcggwk UP00505A_1 mmtwvasCTAATTAGygrdrct UP00507A_1 tarcrsCrCyAATTAgygywyy UP00510A_1 myacTgrrcTAATTAscsbrdr UP00584A_1 trhatvsyTAATTArktwtmtt UP00584A_2 aAgdwcgCyAATTrGckmbtgm UP00584C_1 aakwkcgCTAATTAGybsrygy UP00584C_2 kavwsrsCyAATTrGyysmrka UP00584F_2 mAkrdyrCyAATTrGckrwtgm UP00588A_1 mahrgcGCTAATTAGygcswGm UP00588B_1 tcakvkGyTAATTAgChaAdwma UP00594C_2 wmakhtgcyAATTrrcmwrwwhw UP00596A_2 kkmbtrstTAATTAakwrtmds UP00596B_1 kkmcgcgTTAATTAAkmmtcgr UP00596B_2 twmmwasyTAATTArtwawadk UP00610A_1 kywsrksskCTAATTArkgcwmT UP00614A_1 tkcrwkrstrATyagyaaawwaa UP00614B_1 wsvgakssTAATTAgsmawwwmw UP00618A_1 wwvrybagcTAATTArkgywmt UP00618B_1 wyhcgrgcTAATTAkcycarwaw UP00619A_1 wAytkTAATywAATTAkyTdag UP00623A_1 tyatcggsTAATTAscycAktmr UP00623A_2 wtakcggsYAATTRscymAdwar UP00623B_1 whmtrkGsTAATTAsCccAtwaa UP00623B_2 whatskGyTAATTAsCycAdtar UP00624A_1 wwmdwkgbTAATTAkcmawwawa UP00624B_1 trvgwbgsTaATtAgcmwawwmw UP00625A_1 wAgrkkgCTAATTAGbsvyykw UP00625B_1 wAgdkbrCTAATTAGysryhgw UP00625C_1 wtmkmgGcTAATTArCmmAwwaw UP00625D_1 aAkrtsrCTAATTAGcgrthgw MA2174.1 cTAATTAg |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.