footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	GATAATTA (UniPROBE 20160601)
Organisms:	Mus musculus, Drosophila melanogaster, Homo sapiens
Libraries:	UniPROBE 20160601 ¹ ¹ Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length:	8
Sequence:	GATAATTA
Type:	Heterodimer
Binding TFs:	UP00127A (Homeobox domain) UP00106A (Homeobox domain) UP00108A (Homeobox domain) UP00110A (Homeobox domain) UP00113A (Homeobox domain) UP00115A (Homeobox domain, Homeobox KN domain) UP00116A (Homeobox domain) UP00123A (Homeobox domain) UP00124A (Homeobox domain) UP00126A (Homeobox domain) UP00130A (Homeobox domain, Homeobox KN domain) UP00131A (Homeobox domain) UP00132A (Homeobox domain) UP00137A (Homeobox domain) UP00138A (Homeobox domain) UP00139A (Homeobox domain) UP00141A (Homeobox domain) UP00144A (Homeobox domain) UP00149A (Homeobox domain) UP00151A (Homeobox domain) UP00154A (Homeobox domain) UP00162A (Homeobox domain) UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00172A (Homeobox domain, Homeobox KN domain) UP00174A (Homeobox domain) UP00181A (Homeobox domain) UP00182A (Homeobox domain) UP00189A (Homeobox domain) UP00196A (Homeobox domain) UP00200A (Homeobox domain) UP00201A (Homeobox domain) UP00202A (Homeobox domain) UP00204A (Homeobox domain) UP00206A (Homeobox domain) UP00212A (Homeobox domain, Homeobox KN domain) UP00214A (Homeobox domain) UP00215A (Homeobox domain) UP00220A (Homeobox domain) UP00221A (Homeobox domain) UP00230A (Homeobox domain) UP00233A (Homeobox domain) UP00234A (Homeobox domain) UP00238A (Homeobox domain) UP00241A (Homeobox domain) UP00242A (Homeobox domain) UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00260A (Homeobox domain) UP00262A (Homeobox domain, Homeobox KN domain) UP00146A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00209A (Homeobox domain, Homeobox KN domain) UP00505A (Homeobox domain) UP00507A (Homeobox domain) UP00510A (Homeobox domain) UP00512A (Homeobox domain) UP00584A (Homeobox domain) UP00584B (Homeobox domain) UP00584D (Homeobox domain) UP00588A (Homeobox domain) UP00588B (Homeobox domain, Homeobox KN domain) UP00594B (Homeobox domain) UP00594C (Homeobox domain) UP00595A (Homeobox domain) UP00595B (Homeobox domain) UP00596A (Homeobox domain) UP00596B (Homeobox domain) UP00596C (Homeobox domain) UP00598A (Homeobox domain) UP00603A (Homeobox domain) UP00603B (Homeobox domain) UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00611D (Homeobox domain, 'Paired box' domain) UP00614A (Homeobox domain) UP00614B (Homeobox domain) UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00619A (Homeobox domain, Homeobox KN domain) UP00619B (Homeobox domain, Homeobox KN domain) UP00619C (Homeobox domain, Homeobox KN domain) UP00623A (Homeobox domain) UP00623B (Homeobox domain) UP00624A (Homeobox domain) UP00625A (Homeobox domain) UP00625B (Homeobox domain) UP00625C (Homeobox domain) UP00625D (Homeobox domain) UP00626A (Homeobox domain) UP00626C (Homeobox domain)
Binding Motifs:	UP00200A_2 rrtwATTAATKAykyc UP00106A_1 kwvcryTAATTArkrc UP00108A_1 wawayTAATTAryTsav UP00110A_1 bcrcdaTAATTAcmswc UP00113A_1 CgmrTTAATTAAywawm UP00115A_1 waaayTAATTArykmhs UP00116A_1 wrcmyTAATTArtkswy UP00123A_1 kkmsTAATTAGkgshv UP00124A_1 marsTAATTAgywcAt UP00126A_1 vrdrYAATTRbhymag UP00127A_1 asryTAATTAgyysAk UP00130A_1 sdaaTTAATTAAwwmmk UP00131A_1 dscrCTAATTAGysrkt UP00132A_1 ymcmGCTAATTAGckkw UP00137A_1 wravcTMATKAgykrrw UP00138A_1 vmrgyAATTrsytsAd UP00139A_1 dtbcryYAATTRrtrcw UP00141A_1 csaryTAATTAryratt UP00144A_1 cgmrTTAATTAAtwahy UP00146A_1 vwmswTAATKAGstkgm UP00149A_1 vrkaaTTAATTAAyrsg UP00151A_1 taakYAATTRrtkrtr UP00154A_1 kmrmdaTAATTAcmswm UP00162A_1 wvarcTAATTAgygswc UP00163A_1 wgmmyYAATTRrygrah UP00167A_1 gsvAAcTAATTArkgc UP00172A_1 cgmrTTAATTAAkwdac UP00174A_1 amggTAATTAscymAd UP00181A_1 marsyAATTrsygaaw UP00182A_1 amgkTAATTACcymak UP00189A_1 amgkTAATTAscwmar UP00196A_1 grttrtTAATTAackbg UP00200A_1 gmwwATTAATTAmyybg UP00201A_1 wvmrCTAATTAGykshy UP00202A_1 btgarrTAATTAay UP00204A_1 wdsmaCYAATTRGtgbw UP00206A_1 stakTAATTAmtkshr UP00209A_1 cgmryTAATTArtymcy UP00212A_1 sraaTTAATTAAwwamy UP00214A_1 amgkTAATTAschmat UP00215A_1 asgtTAATTAvcyyag UP00220A_1 wgmrcyAATTrgyGsgr UP00221A_1 yrkmAyTAATTAryrv UP00230A_1 ssrgyAATTrsykmts UP00233A_1 rvkgTAATTAsmycAg UP00234A_1 krmwayTAATTAatwm UP00238A_1 gawwwTTAATKAmtkyk UP00241A_1 ytgrgkTAATTAmcst UP00242A_1 twkrrgTAATTAhykt UP00248A_1 mgwmyTAATTArkwmda UP00260A_1 yrarkTAATTAmtwamw UP00262A_1 mgwaTTAATTAAwwahk UP00146A_2 rhasATAATGAGstkkc UP00209A_2 crmrTTAATTAAttgrm UP00505A_1 mmtwvasCTAATTAGygrdrct UP00507A_1 tarcrsCrCyAATTAgygywyy UP00510A_1 myacTgrrcTAATTAscsbrdr UP00512A_1 aawraarGGTAATTAmydkwkw UP00584A_1 trhatvsyTAATTArktwtmtt UP00584B_2 wtwhtddkmTAATTAvmshwkrw UP00584D_1 Trrkdgbayaattrtwrmtwdw UP00588A_1 mahrgcGCTAATTAGygcswGm UP00588B_1 tcakvkGyTAATTAgChaAdwma UP00594B_1 rcrwrdsCYAATTRGtkgwwsw UP00594C_1 kkycscryTAATTArtmakcsg UP00595A_1 TdanrbbrTAATTAytrywawww UP00595A_2 ttmyywrrTAATTAyyawtwwA UP00595B_1 wamktwTAATywATTAtartttt UP00595B_2 ttmyyargTAATTAcydwtwwA UP00596A_1 rAawwaATAATmATTAkycwwwr UP00596A_2 kkmbtrstTAATTAakwrtmds UP00596B_1 kkmcgcgTTAATTAAkmmtcgr UP00596B_2 twmmwasyTAATTArtwawadk UP00596C_1 kkcsrmgtTAATTAakmatcgg UP00596C_2 wtmtawGkTAATTAhChhAdwaa UP00598A_1 mctwkrsCTAATTAGagcmssg UP00598A_2 makkcmaACYAATTAdswsdky UP00603A_2 bwyraaaacYAATTAaywhwmby UP00603B_1 wtwtrtgyAATTAwttaaktysw UP00603B_2 ssgksgcAkYAATTAskmmymya UP00609E_1 kawmktTAATCGATTActrgad UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00609H_1 kawmktTAATCGATTAcyksad UP00611D_1 whwydkgkTAATTAkcawawwaw UP00614A_1 tkcrwkrstrATyagyaaawwaa UP00614B_1 wsvgakssTAATTAgsmawwwmw UP00616C_1 kgacgyyyTAATTArwcrtcrr UP00616E_1 kgmcgyyyTAATTArwcakcrg UP00618A_1 wwvrybagcTAATTArkgywmt UP00618B_1 wyhcgrgcTAATTAkcycarwaw UP00618C_1 twwmrybagcTAATTArbrywmt UP00619A_1 wAytkTAATywAATTAkyTdag UP00619B_1 rwrtdTwwtyyAATTArkwywaw UP00619C_1 AwgtwTAATyTAATTAwtwkwg UP00623A_1 tyatcggsTAATTAscycAktmr UP00623A_2 wtakcggsYAATTRscymAdwar UP00623B_1 whmtrkGsTAATTAsCccAtwaa UP00623B_2 whatskGyTAATTAsCycAdtar UP00624A_1 wwmdwkgbTAATTAkcmawwawa UP00625A_1 wAgrkkgCTAATTAGbsvyykw UP00625B_1 wAgdkbrCTAATTAGysryhgw UP00625C_1 wtmkmgGcTAATTArCmmAwwaw UP00625D_1 aAkrtsrCTAATTAGcgrthgw UP00626A_1 wtmcryrYTAATTARkrrwgrg UP00626C_1 tmmmamvTTAATTAAkwrtmtg
Publications:	Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, PeÃ±a-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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