footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	ATAATTAC (UniPROBE 20160601)
Organisms:	Mus musculus, Drosophila melanogaster, Homo sapiens
Libraries:	UniPROBE 20160601 ¹ ¹ Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length:	8
Sequence:	ATAATTAC
Type:	Heterodimer
Binding TFs:	UP00263A (Homeobox domain) UP00063A / UP00391A (Homeobox domain) UP00106A (Homeobox domain) UP00116A (Homeobox domain) UP00121A (Homeobox domain) UP00123A (Homeobox domain) UP00126A (Homeobox domain) UP00131A (Homeobox domain) UP00138A (Homeobox domain) UP00139A (Homeobox domain) UP00140A (Homeobox domain) UP00144A (Homeobox domain) UP00151A (Homeobox domain) UP00162A (Homeobox domain) UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00168A (Homeobox domain) UP00171A (Homeobox domain) UP00174A (Homeobox domain) UP00182A (Homeobox domain) UP00196A (Homeobox domain) UP00197A (Homeobox domain) UP00200A (Homeobox domain) UP00201A (Homeobox domain) UP00202A (Homeobox domain) UP00206A (Homeobox domain) UP00215A (Homeobox domain) UP00225A (Homeobox domain) UP00230A (Homeobox domain) UP00233A (Homeobox domain) UP00234A (Homeobox domain) UP00238A (Homeobox domain) UP00240A (Homeobox domain) UP00241A (Homeobox domain) UP00242A (Homeobox domain) UP00245A (Homeobox domain) UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00255A (Homeobox domain) UP00259A (Homeobox domain) UP00260A (Homeobox domain) UP00164A (Homeobox domain) UP00505A (Homeobox domain) UP00507A (Homeobox domain) UP00512A (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00595A (Homeobox domain) UP00595B (Homeobox domain) UP00596A (Homeobox domain) UP00596B (Homeobox domain) UP00596C (Homeobox domain) UP00604E (Homeobox domain) UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00623A (Homeobox domain) UP00623B (Homeobox domain)
Binding Motifs:	UP00259A_1 wwtksgTAATTACsdy UP00200A_2 rrtwATTAATKAykyc UP00255A_1 twrttaATTAwtaawwr UP00063A_1 tkgagbTAATTAry UP00106A_1 kwvcryTAATTArkrc UP00116A_1 wrcmyTAATTArtkswy UP00140A_2 ywarGTCGTAAAawyht UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00123A_1 kkmsTAATTAGkgshv UP00126A_1 vrdrYAATTRbhymag UP00131A_1 dscrCTAATTAGysrkt UP00138A_1 vmrgyAATTrsytsAd UP00139A_1 dtbcryYAATTRrtrcw UP00140A_5 wraryTAATTArytgkw UP00144A_1 cgmrTTAATTAAtwahy UP00151A_1 taakYAATTRrtkrtr UP00162A_1 wvarcTAATTAgygswc UP00164A_1 sgmrtTAATTAatwagc UP00167A_1 gsvAAcTAATTArkgc UP00168A_1 taadTAATTAATrgctw UP00171A_1 mamAAcyAATTAAktw UP00174A_1 amggTAATTAscymAd UP00140A_3 ywavGTCGTAAAatywt UP00140A_4 mwwyyAATAAAAhymh UP00182A_1 amgkTAATTACcymak UP00196A_1 grttrtTAATTAackbg UP00197A_1 rkagGTMATWAAyydk UP00200A_1 gmwwATTAATTAmyybg UP00201A_1 wvmrCTAATTAGykshy UP00202A_1 btgarrTAATTAay UP00206A_1 stakTAATTAmtkshr UP00215A_1 asgtTAATTAvcyyag UP00225A_1 cmaTAATTrATTAym UP00230A_1 ssrgyAATTrsykmts UP00233A_1 rvkgTAATTAsmycAg UP00234A_1 krmwayTAATTAatwm UP00238A_1 gawwwTTAATKAmtkyk UP00240A_1 wrmGGYmATWAAatkw UP00241A_1 ytgrgkTAATTAmcst UP00242A_1 twkrrgTAATTAhykt UP00245A_1 twarGTCRTAAAaysk UP00248A_1 mgwmyTAATTArkwmda UP00260A_1 yrarkTAATTAmtwamw UP00263A_1 wsykGyAATTAAtarw UP00391A_1 tygmrbTAATTAry UP00063A_2 aarawCbATTArsr UP00164A_2 kkmkTAATTAmkggmm UP00505A_1 mmtwvasCTAATTAGygrdrct UP00507A_1 tarcrsCrCyAATTAgygywyy UP00512A_1 aawraarGGTAATTAmydkwkw UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00595A_1 TdanrbbrTAATTAytrywawww UP00595A_2 ttmyywrrTAATTAyyawtwwA UP00595B_1 wamktwTAATywATTAtartttt UP00595B_2 ttmyyargTAATTAcydwtwwA UP00596A_1 rAawwaATAATmATTAkycwwwr UP00596A_2 kkmbtrstTAATTAakwrtmds UP00596B_1 kkmcgcgTTAATTAAkmmtcgr UP00596B_2 twmmwasyTAATTArtwawadk UP00596C_1 kkcsrmgtTAATTAakmatcgg UP00596C_2 wtmtawGkTAATTAhChhAdwaa UP00604E_1 tawwywATrTwwATtAwytaAA UP00616C_1 kgacgyyyTAATTArwcrtcrr UP00616E_1 kgmcgyyyTAATTArwcakcrg UP00618B_1 wyhcgrgcTAATTAkcycarwaw UP00618C_1 twwmrybagcTAATTArbrywmt UP00623A_1 tyatcggsTAATTAscycAktmr UP00623A_2 wtakcggsYAATTRscymAdwar UP00623B_2 whatskGyTAATTAsCycAdtar
Publications:	Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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