DNA Binding Site

Accessions: ATAATTAA (UniPROBE 20160601)
Organisms: Mus musculus, Saccharomyces cerevisiae, Drosophila melanogaster, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: ATAATTAA
Type: Heterodimer
Binding TFs: UP00352A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00325A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00224A (Homeobox domain, 'Paired box' domain)
UP00127A (Homeobox domain)
UP00263A (Homeobox domain)
UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00108A (Homeobox domain)
UP00110A (Homeobox domain)
UP00113A (Homeobox domain)
UP00115A (Homeobox domain, Homeobox KN domain)
UP00116A (Homeobox domain)
UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00120A (Homeobox domain)
UP00121A (Homeobox domain)
UP00124A (Homeobox domain)
UP00126A (Homeobox domain)
UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00130A (Homeobox domain, Homeobox KN domain)
UP00136A (Homeobox domain, Homeobox KN domain)
UP00137A (Homeobox domain)
UP00140A (Homeobox domain)
UP00141A (Homeobox domain)
UP00142A (Homeobox domain)
UP00144A (Homeobox domain)
UP00149A (Homeobox domain)
UP00152A (Homeobox domain)
UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain)
UP00168A (Homeobox domain)
UP00169A (Homeobox domain, Homeobox KN domain)
UP00170A (Homeobox domain, Homeobox KN domain)
UP00172A (Homeobox domain, Homeobox KN domain)
UP00175A (Homeobox domain, Homeobox KN domain)
UP00182A (Homeobox domain)
UP00187A (Homeobox domain)
UP00188A (Homeobox domain, Homeobox KN domain)
UP00189A (Homeobox domain)
UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00196A (Homeobox domain)
UP00197A (Homeobox domain)
UP00200A (Homeobox domain)
UP00201A (Homeobox domain)
UP00202A (Homeobox domain)
UP00212A (Homeobox domain, Homeobox KN domain)
UP00213A (Homeobox domain)
UP00214A (Homeobox domain)
UP00215A (Homeobox domain)
UP00218A (Homeobox domain)
UP00221A (Homeobox domain)
UP00225A (Homeobox domain)
UP00233A (Homeobox domain)
UP00234A (Homeobox domain)
UP00237A (Homeobox domain)
UP00238A (Homeobox domain)
UP00241A (Homeobox domain)
UP00242A (Homeobox domain)
UP00243A (Homeobox domain)
UP00244A (Homeobox domain)
UP00247A (Homeobox domain, 'Paired box' domain)
UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00251A (Homeobox domain)
UP00252A (Homeobox domain)
UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00255A (Homeobox domain)
UP00257A (Homeobox domain)
UP00259A (Homeobox domain)
UP00261A (Homeobox domain, Homeobox KN domain)
UP00262A (Homeobox domain, Homeobox KN domain)
UP00266A (Homeobox domain)
UP00274A (Homeobox domain)
UP00164A (Homeobox domain)
UP00209A (Homeobox domain, Homeobox KN domain)
UP00505A (Homeobox domain)
UP00584A (Homeobox domain)
UP00584B (Homeobox domain)
UP00584D (Homeobox domain)
UP00584E (Homeobox domain)
UP00584F (Homeobox domain)
UP00588B (Homeobox domain, Homeobox KN domain)
UP00595A (Homeobox domain)
UP00595B (Homeobox domain)
UP00595C (Homeobox domain)
UP00596A (Homeobox domain)
UP00596B (Homeobox domain)
UP00596C (Homeobox domain)
UP00598A (Homeobox domain)
UP00614A (Homeobox domain)
UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00619A (Homeobox domain, Homeobox KN domain)
UP00619B (Homeobox domain, Homeobox KN domain)
UP00619C (Homeobox domain, Homeobox KN domain)
UP00624A (Homeobox domain)
UP00626A (Homeobox domain)
UP00626C (Homeobox domain)
Binding Motifs: UP00259A_1 wwtksgTAATTACsdy
UP00200A_2 rrtwATTAATKAykyc
UP00255A_1 twrttaATTAwtaawwr
UP00105A_1 rmttAATTAATTAadtc
UP00108A_1 wawayTAATTAryTsav
UP00110A_1 bcrcdaTAATTAcmswc
UP00113A_1 CgmrTTAATTAAywawm
UP00115A_1 waaayTAATTArykmhs
UP00116A_1 wrcmyTAATTArtkswy
UP00140A_2 ywarGTCGTAAAawyht
UP00118A_1 wrtwATTAATkArkyc
UP00120A_1 tgmayYAATTRryksrr
UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww
UP00124A_1 marsTAATTAgywcAt
UP00126A_1 vrdrYAATTRbhymag
UP00127A_1 asryTAATTAgyysAk
UP00128A_1 swtAaTTAATTArkkyr
UP00129A_1 rmyTAATTAATTAaktm
UP00130A_1 sdaaTTAATTAAwwmmk
UP00136A_1 wvmrYTAATTARygrwr
UP00137A_1 wravcTMATKAgykrrw
UP00140A_5 wraryTAATTArytgkw
UP00141A_1 csaryTAATTAryratt
UP00142A_1 vataaTTAATTAAygsg
UP00144A_1 cgmrTTAATTAAtwahy
UP00149A_1 vrkaaTTAATTAAyrsg
UP00152A_1 gtscryTAATTArtksw
UP00158A_1 rrwtAATTAATTAwgtc
UP00164A_1 sgmrtTAATTAatwagc
UP00167A_1 gsvAAcTAATTArkgc
UP00168A_1 taadTAATTAATrgctw
UP00169A_1 rrwwwTTAATTAAtwyb
UP00170A_1 mhmaAyymMTTAakwy
UP00172A_1 cgmrTTAATTAAkwdac
UP00175A_1 csyayTAATTArtymcy
UP00140A_3 ywavGTCGTAAAatywt
UP00140A_4 mwwyyAATAAAAhymh
UP00182A_1 amgkTAATTACcymak
UP00187A_1 cgcryTAATTArthasc
UP00188A_1 sgawTTAATTAAwwwyy
UP00189A_1 amgkTAATTAscwmar
UP00191A_1 ywkTATGCWAATkara
UP00196A_1 grttrtTAATTAackbg
UP00197A_1 rkagGTMATWAAyydk
UP00200A_1 gmwwATTAATTAmyybg
UP00201A_1 wvmrCTAATTAGykshy
UP00202A_1 btgarrTAATTAay
UP00209A_1 cgmryTAATTArtymcy
UP00212A_1 sraaTTAATTAAwwamy
UP00213A_1 rcggycATwAAAwtadw
UP00214A_1 amgkTAATTAschmat
UP00215A_1 asgtTAATTAvcyyag
UP00218A_1 bktmAtTAATkAakwm
UP00221A_1 yrkmAyTAATTAryrv
UP00224A_1 TrayTAATTArtkvac
UP00225A_1 cmaTAATTrATTAym
UP00233A_1 rvkgTAATTAsmycAg
UP00234A_1 krmwayTAATTAatwm
UP00237A_1 cryarTTAATTAAykkg
UP00238A_1 gawwwTTAATKAmtkyk
UP00241A_1 ytgrgkTAATTAmcst
UP00242A_1 twkrrgTAATTAhykt
UP00243A_1 hmyvCyAATTrGkbgw
UP00244A_1 kwatyAATTAATaayww
UP00247A_1 wsawyTAATTAryysdm
UP00248A_1 mgwmyTAATTArkwmda
UP00251A_1 wwycryTAATTArtksw
UP00252A_1 cgmrtTAATTAatwayt
UP00254A_1 dtdwrwTAATTArktw
UP00257A_1 ckmsyTAATTArtyrds
UP00261A_1 kaaaCTAATTAGstwtg
UP00262A_1 mgwaTTAATTAAwwahk
UP00263A_1 wsykGyAATTAAtarw
UP00266A_1 vkaayTAATTAryTast
UP00274A_1 ttsmmaYTAATTARwwwmks
UP00325A_1 yttwyywwTATAwwwwrkdv
UP00352A_1 mtkwhywmTATATAawwwwrh
UP00164A_2 kkmkTAATTAmkggmm
UP00209A_2 crmrTTAATTAAttgrm
UP00505A_1 mmtwvasCTAATTAGygrdrct
UP00584A_1 trhatvsyTAATTArktwtmtt
UP00584B_2 wtwhtddkmTAATTAvmshwkrw
UP00584D_1 Trrkdgbayaattrtwrmtwdw
UP00584E_2 wymdwkgkTAATTAwcmwatwaw
UP00584F_1 amgatrayTAATTArygsbgcm
UP00588B_1 tcakvkGyTAATTAgChaAdwma
UP00595A_1 TdanrbbrTAATTAytrywawww
UP00595A_2 ttmyywrrTAATTAyyawtwwA
UP00595B_1 wamktwTAATywATTAtartttt
UP00595C_2 aakwywATaTATAyATwwhamw
UP00596A_1 rAawwaATAATmATTAkycwwwr
UP00596A_2 kkmbtrstTAATTAakwrtmds
UP00596B_1 kkmcgcgTTAATTAAkmmtcgr
UP00596B_2 twmmwasyTAATTArtwawadk
UP00596C_1 kkcsrmgtTAATTAakmatcgg
UP00596C_2 wtmtawGkTAATTAhChhAdwaa
UP00598A_1 mctwkrsCTAATTAGagcmssg
UP00598A_2 makkcmaACYAATTAdswsdky
UP00614A_1 tkcrwkrstrATyagyaaawwaa
UP00616A_1 ykwrytwATTATGCAkaywkhm
UP00616B_1 hkwrythATTATGCRgayakhm
UP00616C_1 kgacgyyyTAATTArwcrtcrr
UP00616E_1 kgmcgyyyTAATTArwcakcrg
UP00618C_1 twwmrybagcTAATTArbrywmt
UP00619A_1 wAytkTAATywAATTAkyTdag
UP00619B_1 rwrtdTwwtyyAATTArkwywaw
UP00619C_1 AwgtwTAATyTAATTAwtwkwg
UP00624A_1 wwmdwkgbTAATTAkcmawwawa
UP00626A_1 wtmcryrYTAATTARkrrwgrg
UP00626C_1 tmmmamvTTAATTAAkwrtmtg
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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