footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	GTAATTAA (UniPROBE 20160601)
Organisms:	Mus musculus, Saccharomyces cerevisiae, Drosophila melanogaster, Homo sapiens
Libraries:	UniPROBE 20160601 ¹ ¹ Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length:	8
Sequence:	GTAATTAA
Type:	Heterodimer
Binding TFs:	UP00127A (Homeobox domain) UP00263A (Homeobox domain) UP00063A / UP00391A (Homeobox domain) UP00106A (Homeobox domain) UP00108A (Homeobox domain) UP00110A (Homeobox domain) UP00113A (Homeobox domain) UP00115A (Homeobox domain, Homeobox KN domain) UP00116A (Homeobox domain) UP00123A (Homeobox domain) UP00124A (Homeobox domain) UP00126A (Homeobox domain) UP00130A (Homeobox domain, Homeobox KN domain) UP00137A (Homeobox domain) UP00138A (Homeobox domain) UP00141A (Homeobox domain) UP00142A (Homeobox domain) UP00144A (Homeobox domain) UP00152A (Homeobox domain) UP00154A (Homeobox domain) UP00162A (Homeobox domain) UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00168A (Homeobox domain) UP00169A (Homeobox domain, Homeobox KN domain) UP00172A (Homeobox domain, Homeobox KN domain) UP00174A (Homeobox domain) UP00175A (Homeobox domain, Homeobox KN domain) UP00177A (Homeobox domain) UP00182A (Homeobox domain) UP00187A (Homeobox domain) UP00188A (Homeobox domain, Homeobox KN domain) UP00189A (Homeobox domain) UP00196A (Homeobox domain) UP00197A (Homeobox domain) UP00200A (Homeobox domain) UP00201A (Homeobox domain) UP00202A (Homeobox domain) UP00204A (Homeobox domain) UP00206A (Homeobox domain) UP00207A (Homeobox domain) UP00212A (Homeobox domain, Homeobox KN domain) UP00213A (Homeobox domain) UP00214A (Homeobox domain) UP00215A (Homeobox domain) UP00217A (Homeobox domain) UP00218A (Homeobox domain) UP00233A (Homeobox domain) UP00237A (Homeobox domain) UP00238A (Homeobox domain) UP00240A (Homeobox domain) UP00241A (Homeobox domain) UP00242A (Homeobox domain) UP00251A (Homeobox domain) UP00252A (Homeobox domain) UP00253A (Homeobox domain) UP00259A (Homeobox domain) UP00260A (Homeobox domain) UP00261A (Homeobox domain, Homeobox KN domain) UP00262A (Homeobox domain, Homeobox KN domain) UP00264A (Homeobox domain) UP00266A (Homeobox domain) UP00274A (Homeobox domain) UP00164A (Homeobox domain) UP00209A (Homeobox domain, Homeobox KN domain) UP00256A (Homeobox domain, Homeobox KN domain) UP00503A (Homeobox domain) UP00505A (Homeobox domain) UP00507A (Homeobox domain) UP00510A (Homeobox domain) UP00512A (Homeobox domain) UP00584A (Homeobox domain) UP00584F (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00588A (Homeobox domain) UP00588B (Homeobox domain, Homeobox KN domain) UP00594A (Homeobox domain) UP00594C (Homeobox domain) UP00595A (Homeobox domain) UP00596A (Homeobox domain) UP00596B (Homeobox domain) UP00596C (Homeobox domain) UP00598B (Homeobox domain) UP00603A (Homeobox domain) UP00603B (Homeobox domain) UP00610A (Homeobox domain, 'Paired box' domain) UP00610B (Homeobox domain, 'Paired box' domain) UP00610C (Homeobox domain, 'Paired box' domain) UP00610D (Homeobox domain, 'Paired box' domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00623A (Homeobox domain) UP00623B (Homeobox domain) UP00626A (Homeobox domain)
Binding Motifs:	UP00259A_1 wwtksgTAATTACsdy UP00200A_2 rrtwATTAATKAykyc UP00063A_1 tkgagbTAATTAry UP00106A_1 kwvcryTAATTArkrc UP00108A_1 wawayTAATTAryTsav UP00110A_1 bcrcdaTAATTAcmswc UP00113A_1 CgmrTTAATTAAywawm UP00115A_1 waaayTAATTArykmhs UP00116A_1 wrcmyTAATTArtkswy UP00123A_1 kkmsTAATTAGkgshv UP00124A_1 marsTAATTAgywcAt UP00126A_1 vrdrYAATTRbhymag UP00127A_1 asryTAATTAgyysAk UP00130A_1 sdaaTTAATTAAwwmmk UP00137A_1 wravcTMATKAgykrrw UP00138A_1 vmrgyAATTrsytsAd UP00141A_1 csaryTAATTAryratt UP00142A_1 vataaTTAATTAAygsg UP00144A_1 cgmrTTAATTAAtwahy UP00152A_1 gtscryTAATTArtksw UP00154A_1 kmrmdaTAATTAcmswm UP00162A_1 wvarcTAATTAgygswc UP00163A_1 wgmmyYAATTRrygrah UP00164A_1 sgmrtTAATTAatwagc UP00168A_1 taadTAATTAATrgctw UP00169A_1 rrwwwTTAATTAAtwyb UP00172A_1 cgmrTTAATTAAkwdac UP00174A_1 amggTAATTAscymAd UP00175A_1 csyayTAATTArtymcy UP00177A_1 ywavGTCGTAAAatywt UP00182A_1 amgkTAATTACcymak UP00264A_3 wwwbCTCGTAAAawtt UP00187A_1 cgcryTAATTArthasc UP00188A_1 sgawTTAATTAAwwwyy UP00189A_1 amgkTAATTAscwmar UP00196A_1 grttrtTAATTAackbg UP00197A_1 rkagGTMATWAAyydk UP00200A_1 gmwwATTAATTAmyybg UP00201A_1 wvmrCTAATTAGykshy UP00202A_1 btgarrTAATTAay UP00204A_1 wdsmaCYAATTRGtgbw UP00206A_1 stakTAATTAmtkshr UP00207A_1 rrrgymATWAAAwycr UP00209A_1 cgmryTAATTArtymcy UP00212A_1 sraaTTAATTAAwwamy UP00213A_1 rcggycATwAAAwtadw UP00214A_1 amgkTAATTAschmat UP00215A_1 asgtTAATTAvcyyag UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw UP00218A_1 bktmAtTAATkAakwm UP00233A_1 rvkgTAATTAsmycAg UP00237A_1 cryarTTAATTAAykkg UP00238A_1 gawwwTTAATKAmtkyk UP00240A_1 wrmGGYmATWAAatkw UP00241A_1 ytgrgkTAATTAmcst UP00242A_1 twkrrgTAATTAhykt UP00264A_2 waarGTCRTAAAayrk UP00251A_1 wwycryTAATTArtksw UP00252A_1 cgmrtTAATTAatwayt UP00253A_1 wscayYAATTRryssmy UP00256A_1 swrcryTAATTArkkyw UP00260A_1 yrarkTAATTAmtwamw UP00261A_1 kaaaCTAATTAGstwtg UP00262A_1 mgwaTTAATTAAwwahk UP00263A_1 wsykGyAATTAAtarw UP00264A_4 ctrarcTAATTAmyky UP00266A_1 vkaayTAATTAryTast UP00274A_1 ttsmmaYTAATTARwwwmks UP00391A_1 tygmrbTAATTAry UP00063A_2 aarawCbATTArsr UP00164A_2 kkmkTAATTAmkggmm UP00209A_2 crmrTTAATTAAttgrm UP00256A_2 wmcrCTAATTAGcggwk UP00503A_1 ggrarrgGymATWAAattyhba UP00505A_1 mmtwvasCTAATTAGygrdrct UP00507A_1 tarcrsCrCyAATTAgygywyy UP00510A_1 myacTgrrcTAATTAscsbrdr UP00512A_1 aawraarGGTAATTAmydkwkw UP00584A_1 trhatvsyTAATTArktwtmtt UP00584F_1 amgatrayTAATTArygsbgcm UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00588A_1 mahrgcGCTAATTAGygcswGm UP00588B_1 tcakvkGyTAATTAgChaAdwma UP00594A_1 gkscscryTAATTArymmgcgg UP00594C_1 kkycscryTAATTArtmakcsg UP00595A_1 TdanrbbrTAATTAytrywawww UP00596A_1 rAawwaATAATmATTAkycwwwr UP00596A_2 kkmbtrstTAATTAakwrtmds UP00596B_1 kkmcgcgTTAATTAAkmmtcgr UP00596B_2 twmmwasyTAATTArtwawadk UP00596C_1 kkcsrmgtTAATTAakmatcgg UP00596C_2 wtmtawGkTAATTAhChhAdwaa UP00598B_1 ykyrscmYTAATTAAkmwsckg UP00598B_2 gkcmscryTAATTArkvhkssb UP00603A_1 mtwyaaaAAcCAATTAacwmray UP00603B_2 ssgksgcAkYAATTAskmmymya UP00610A_1 kywsrksskCTAATTArkgcwmT UP00610A_2 aAkwrccyTAATTArmhsmhbw UP00610A_3 wwkrmycaATTAATtwgkkcdc UP00610B_1 twwwkcbkttTAATTAasmasgk UP00610C_1 aakwsswyTAATTArygsacbw UP00610C_2 aakwgswyTAATTArygsacbw UP00610D_1 varwsgcytAATTarkccmwwk UP00610D_2 aakwgshyTAATTArygsackw UP00613B_2 ykwmrwctTAATTAaratysrr UP00616E_1 kgmcgyyyTAATTArwcakcrg UP00618A_1 wwvrybagcTAATTArkgywmt UP00623A_1 tyatcggsTAATTAscycAktmr UP00623A_2 wtakcggsYAATTRscymAdwar UP00623B_1 whmtrkGsTAATTAsCccAtwaa UP00623B_2 whatskGyTAATTAsCycAdtar UP00626A_1 wtmcryrYTAATTARkrrwgrg
Publications:	Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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