DNA Binding Site

Accessions: ATAATTAG (UniPROBE 20160601)
Organisms: Mus musculus, Drosophila melanogaster, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: ATAATTAG
Type: Heterodimer
Binding TFs: UP00224A (Homeobox domain, 'Paired box' domain)
UP00127A (Homeobox domain)
UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00106A (Homeobox domain)
UP00108A (Homeobox domain)
UP00113A (Homeobox domain)
UP00115A (Homeobox domain, Homeobox KN domain)
UP00116A (Homeobox domain)
UP00120A (Homeobox domain)
UP00123A (Homeobox domain)
UP00124A (Homeobox domain)
UP00126A (Homeobox domain)
UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00130A (Homeobox domain, Homeobox KN domain)
UP00131A (Homeobox domain)
UP00132A (Homeobox domain)
UP00136A (Homeobox domain, Homeobox KN domain)
UP00139A (Homeobox domain)
UP00141A (Homeobox domain)
UP00142A (Homeobox domain)
UP00149A (Homeobox domain)
UP00152A (Homeobox domain)
UP00154A (Homeobox domain)
UP00156A (Homeobox domain)
UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00162A (Homeobox domain)
UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain)
UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain)
UP00169A (Homeobox domain, Homeobox KN domain)
UP00171A (Homeobox domain)
UP00172A (Homeobox domain, Homeobox KN domain)
UP00174A (Homeobox domain)
UP00175A (Homeobox domain, Homeobox KN domain)
UP00179A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00184A (Homeobox domain, Homeobox KN domain)
UP00187A (Homeobox domain)
UP00188A (Homeobox domain, Homeobox KN domain)
UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00201A (Homeobox domain)
UP00202A (Homeobox domain)
UP00204A (Homeobox domain)
UP00212A (Homeobox domain, Homeobox KN domain)
UP00215A (Homeobox domain)
UP00220A (Homeobox domain)
UP00221A (Homeobox domain)
UP00225A (Homeobox domain)
UP00230A (Homeobox domain)
UP00234A (Homeobox domain)
UP00237A (Homeobox domain)
UP00243A (Homeobox domain)
UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00251A (Homeobox domain)
UP00252A (Homeobox domain)
UP00253A (Homeobox domain)
UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00261A (Homeobox domain, Homeobox KN domain)
UP00262A (Homeobox domain, Homeobox KN domain)
UP00266A (Homeobox domain)
UP00146A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00209A (Homeobox domain, Homeobox KN domain)
UP00256A (Homeobox domain, Homeobox KN domain)
UP00505A (Homeobox domain)
UP00506A (Homeobox domain)
UP00507A (Homeobox domain)
UP00510A (Homeobox domain)
UP00584A (Homeobox domain)
UP00584B (Homeobox domain)
UP00584C (Homeobox domain)
UP00584D (Homeobox domain)
UP00584F (Homeobox domain)
UP00588A (Homeobox domain)
UP00588B (Homeobox domain, Homeobox KN domain)
UP00589D (Fork head domain)
UP00594A (Homeobox domain)
UP00594C (Homeobox domain)
UP00594D (Homeobox domain)
UP00596A (Homeobox domain)
UP00596B (Homeobox domain)
UP00598A (Homeobox domain)
UP00603A (Homeobox domain)
UP00603C (Homeobox domain)
UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00610A (Homeobox domain, 'Paired box' domain)
UP00610B (Homeobox domain, 'Paired box' domain)
UP00610D (Homeobox domain, 'Paired box' domain)
UP00611A (Homeobox domain, 'Paired box' domain)
UP00611D (Homeobox domain, 'Paired box' domain)
UP00613B (Homeobox domain, Homeobox KN domain)
UP00614A (Homeobox domain)
UP00614B (Homeobox domain)
UP00614C (Homeobox domain)
UP00614E (Homeobox domain)
UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00619A (Homeobox domain, Homeobox KN domain)
UP00619B (Homeobox domain, Homeobox KN domain)
UP00619C (Homeobox domain, Homeobox KN domain)
UP00623B (Homeobox domain)
UP00625A (Homeobox domain)
UP00625B (Homeobox domain)
UP00625C (Homeobox domain)
UP00625D (Homeobox domain)
UP00626A (Homeobox domain)
UP00626C (Homeobox domain)
Binding Motifs: UP00105A_1 rmttAATTAATTAadtc
UP00106A_1 kwvcryTAATTArkrc
UP00108A_1 wawayTAATTAryTsav
UP00113A_1 CgmrTTAATTAAywawm
UP00115A_1 waaayTAATTArykmhs
UP00116A_1 wrcmyTAATTArtkswy
UP00120A_1 tgmayYAATTRryksrr
UP00123A_1 kkmsTAATTAGkgshv
UP00124A_1 marsTAATTAgywcAt
UP00126A_1 vrdrYAATTRbhymag
UP00127A_1 asryTAATTAgyysAk
UP00128A_1 swtAaTTAATTArkkyr
UP00129A_1 rmyTAATTAATTAaktm
UP00130A_1 sdaaTTAATTAAwwmmk
UP00131A_1 dscrCTAATTAGysrkt
UP00132A_1 ymcmGCTAATTAGckkw
UP00136A_1 wvmrYTAATTARygrwr
UP00139A_1 dtbcryYAATTRrtrcw
UP00141A_1 csaryTAATTAryratt
UP00142A_1 vataaTTAATTAAygsg
UP00146A_1 vwmswTAATKAGstkgm
UP00149A_1 vrkaaTTAATTAAyrsg
UP00152A_1 gtscryTAATTArtksw
UP00154A_1 kmrmdaTAATTAcmswm
UP00156A_1 vmagACyAATTAgykht
UP00158A_1 rrwtAATTAATTAwgtc
UP00162A_1 wvarcTAATTAgygswc
UP00163A_1 wgmmyYAATTRrygrah
UP00167A_1 gsvAAcTAATTArkgc
UP00169A_1 rrwwwTTAATTAAtwyb
UP00171A_1 mamAAcyAATTAAktw
UP00172A_1 cgmrTTAATTAAkwdac
UP00174A_1 amggTAATTAscymAd
UP00175A_1 csyayTAATTArtymcy
UP00179A_1 ttkTATGCWAATkara
UP00184A_1 wmmvCTAATTAGCkgtg
UP00187A_1 cgcryTAATTArthasc
UP00188A_1 sgawTTAATTAAwwwyy
UP00191A_1 ywkTATGCWAATkara
UP00201A_1 wvmrCTAATTAGykshy
UP00202A_1 btgarrTAATTAay
UP00204A_1 wdsmaCYAATTRGtgbw
UP00209A_1 cgmryTAATTArtymcy
UP00212A_1 sraaTTAATTAAwwamy
UP00215A_1 asgtTAATTAvcyyag
UP00220A_1 wgmrcyAATTrgyGsgr
UP00221A_1 yrkmAyTAATTAryrv
UP00224A_1 TrayTAATTArtkvac
UP00225A_1 cmaTAATTrATTAym
UP00230A_1 ssrgyAATTrsykmts
UP00234A_1 krmwayTAATTAatwm
UP00237A_1 cryarTTAATTAAykkg
UP00243A_1 hmyvCyAATTrGkbgw
UP00248A_1 mgwmyTAATTArkwmda
UP00251A_1 wwycryTAATTArtksw
UP00252A_1 cgmrtTAATTAatwayt
UP00253A_1 wscayYAATTRryssmy
UP00254A_1 dtdwrwTAATTArktw
UP00256A_1 swrcryTAATTArkkyw
UP00261A_1 kaaaCTAATTAGstwtg
UP00262A_1 mgwaTTAATTAAwwahk
UP00266A_1 vkaayTAATTAryTast
UP00146A_2 rhasATAATGAGstkkc
UP00209A_2 crmrTTAATTAAttgrm
UP00256A_2 wmcrCTAATTAGcggwk
UP00505A_1 mmtwvasCTAATTAGygrdrct
UP00506A_1 amkwgvryyAATTrrcksacyw
UP00507A_1 tarcrsCrCyAATTAgygywyy
UP00510A_1 myacTgrrcTAATTAscsbrdr
UP00584A_1 trhatvsyTAATTArktwtmtt
UP00584A_2 aAgdwcgCyAATTrGckmbtgm
UP00584B_2 wtwhtddkmTAATTAvmshwkrw
UP00584C_1 aakwkcgCTAATTAGybsrygy
UP00584C_2 kavwsrsCyAATTrGyysmrka
UP00584D_1 Trrkdgbayaattrtwrmtwdw
UP00584F_1 amgatrayTAATTArygsbgcm
UP00584F_2 mAkrdyrCyAATTrGckrwtgm
UP00588A_1 mahrgcGCTAATTAGygcswGm
UP00588B_1 tcakvkGyTAATTAgChaAdwma
UP00589D_1 rwwygyrTwwAaTAwAwrdAwr
UP00594A_1 gkscscryTAATTArymmgcgg
UP00594A_2 ryrtkwrCyAATTrGtbgwmgw
UP00594C_1 kkycscryTAATTArtmakcsg
UP00594C_2 wmakhtgcyAATTrrcmwrwwhw
UP00594D_1 yagmhskaymwraawmsmcwaw
UP00596A_1 rAawwaATAATmATTAkycwwwr
UP00596A_2 kkmbtrstTAATTAakwrtmds
UP00596B_1 kkmcgcgTTAATTAAkmmtcgr
UP00596B_2 twmmwasyTAATTArtwawadk
UP00598A_1 mctwkrsCTAATTAGagcmssg
UP00598A_2 makkcmaACYAATTAdswsdky
UP00603A_1 mtwyaaaAAcCAATTAacwmray
UP00603A_2 bwyraaaacYAATTAaywhwmby
UP00603C_2 ydmmayrCyAATTrGtmwtyrs
UP00609A_1 ctmwrkTAATCGATTAdckwtc
UP00610A_2 aAkwrccyTAATTArmhsmhbw
UP00610A_3 wwkrmycaATTAATtwgkkcdc
UP00610B_1 twwwkcbkttTAATTAasmasgk
UP00610D_1 varwsgcytAATTarkccmwwk
UP00611A_1 rcrkmwswrTGCAyasrwcmAtr
UP00611A_2 tymwakgkTAATTArcatdwwmw
UP00611D_1 whwydkgkTAATTAkcawawwaw
UP00613B_1 aakrbywcTAATTAgwrcymsh
UP00613B_2 ykwmrwctTAATTAaratysrr
UP00614A_1 tkcrwkrstrATyagyaaawwaa
UP00614B_1 wsvgakssTAATTAgsmawwwmw
UP00614C_1 wwmwchkcAkTAATTAkscrtaw
UP00614E_1 wbmrwkgvtrATyakcmwwwwmw
UP00616A_1 ykwrytwATTATGCAkaywkhm
UP00616B_1 hkwrythATTATGCRgayakhm
UP00616C_1 kgacgyyyTAATTArwcrtcrr
UP00616E_1 kgmcgyyyTAATTArwcakcrg
UP00618A_1 wwvrybagcTAATTArkgywmt
UP00618B_1 wyhcgrgcTAATTAkcycarwaw
UP00618C_1 twwmrybagcTAATTArbrywmt
UP00619A_1 wAytkTAATywAATTAkyTdag
UP00619B_1 rwrtdTwwtyyAATTArkwywaw
UP00619C_1 AwgtwTAATyTAATTAwtwkwg
UP00623B_1 whmtrkGsTAATTAsCccAtwaa
UP00625A_1 wAgrkkgCTAATTAGbsvyykw
UP00625B_1 wAgdkbrCTAATTAGysryhgw
UP00625C_1 wtmkmgGcTAATTArCmmAwwaw
UP00625D_1 aAkrtsrCTAATTAGcgrthgw
UP00626A_1 wtmcryrYTAATTARkrrwgrg
UP00626C_1 tmmmamvTTAATTAAkwrtmtg
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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