Transcription Factor
| Accessions: | UP00144A (UniPROBE 20160601) |
| Names: | homeo box B4, Homeobox protein Hox-B4, Hox-2.6, Hoxb-4, Hoxb4 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P10284 |
| Description: | homeo box B4 |
| Length: | 93 |
| Pfam Domains: | 17-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 KVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQI 60 61 KIWFQNRRMKWKKDHKLPNTKIRSGGTAGAAGG |
| Interface Residues: | 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73 |
| 3D-footprint Homologues: | 5zfz_A, 3d1n_M, 1fjl_B, 6a8r_A, 2h1k_B, 1puf_A, 1ig7_A, 3cmy_A, 1jgg_B, 6m3d_C, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 2ld5_A, 3rkq_B, 2r5y_A, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 7psx_B, 5hod_A, 3l1p_A, 3a01_E, 7q3o_C, 1b72_A, 5jlw_D, 6es3_K, 4xrs_G, 2hdd_A, 1e3o_C, 2xsd_C, 1le8_A, 7xrc_C, 1du0_A, 1puf_B, 8g87_X, 1k61_B, 1o4x_A, 4qtr_D, 1mnm_C |
| Binding Motifs: | UP00144A_1 cgmrTTAATTAAtwahy |
| Binding Sites: | GGTAATTA AATAATTA ACTAATTA AGTAATTA ATAATTAA ATAATTAC ATCATTAA ATTAATGA ATTAATTA CATTAATG CTAATTAA CTAATTAG CTTAATTA GATAATTA GCTAATTA GTAATTAA GTCATTAA GTTAATGA GTTAATTA TAATTAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.