DNA Binding Motif
| Accessions: | UP00178A_1 (UniPROBE 20160601) |
| Names: | Nobox, OG2 homeobox gene, Og2x |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | cgsryyAATTrrkways |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.17 0.50 0.20 0.13 c 02 0.13 0.18 0.54 0.16 g 03 0.23 0.28 0.25 0.23 s 04 0.31 0.23 0.36 0.10 r 05 0.02 0.58 0.03 0.38 y 06 0.02 0.33 0 0.65 y 07 0.92 0.01 0.07 0.01 A 08 0.96 0 0.01 0.03 A 09 0.03 0.01 0 0.96 T 10 0.01 0.07 0.01 0.92 T 11 0.65 0 0.33 0.02 r 12 0.38 0.03 0.58 0.02 r 13 0.14 0.16 0.39 0.30 k 14 0.30 0.19 0.16 0.35 w 15 0.44 0.16 0.16 0.24 a 16 0.23 0.29 0.17 0.31 y 17 0.15 0.41 0.25 0.19 s |
| Binding TFs: | UP00178A (Homeobox domain) |
| Binding Sites: | ACCAATTA ACTAATTA ATAATTGG ATCAATTA ATTAATTA ATTAATTG CAATTAAC CAATTAAG CCAATTAA CCAATTAG CTAATTAA CTAATTAG CTAATTGA CTTAATTA GCAATTAA GCCAATTA GCTAATTA GTTAATTA TAATTAAA TCAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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