Transcription Factor
| Accessions: | UP00209A (UniPROBE 20160601) |
| Names: | AI314867, C130005I02, CART-1, Cart1, cartilage homeo protein 1, Cartilage homeoprotein 1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | cartilage homeo protein 1 |
| Length: | 134 |
| Pfam Domains: | 17-73 Homeobox domain 40-69 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 DELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARV 60 61 QVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVV 120 121 TSCMLPRDASSCMT |
| Interface Residues: | 16, 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73 |
| 3D-footprint Homologues: | 4j19_B, 1puf_A, 3cmy_A, 6a8r_A, 3d1n_M, 1fjl_B, 5zfz_A, 2h1k_B, 1ig7_A, 3lnq_A, 2lkx_A, 1jgg_B, 1zq3_P, 1nk2_P, 6m3d_C, 7q3o_C, 6es3_K, 2ld5_A, 5flv_I, 5zjt_E, 2hdd_A, 7psx_B, 5hod_A, 3rkq_B, 2r5y_A, 1puf_B, 2hos_A, 5jlw_D, 4cyc_A, 4xrs_G, 3l1p_A, 1b72_A, 3a01_E, 1e3o_C, 1le8_A, 2xsd_C, 7xrc_C, 8g87_X, 1du0_A, 4qtr_D, 4xrm_B |
| Binding Motifs: | UP00209A_1 cgmryTAATTArtymcy UP00209A_2 crmrTTAATTAAttgrm |
| Binding Sites: | AATAATTA AATTAATT ACCAATTA ACTAATTA ATAATTAA ATAATTAG ATTAATTA CAATTAAG CCAATTAA CCAATTAG CCTAATTA CTAATTAA CTAATTAG CTTAATTA GATAATTA GCTAATTA GTAATTAA GTTAATTA TAATTAAA TAATTAGA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.