Transcription Factor
| Accessions: | UP00169A (UniPROBE 20160601) |
| Names: | LIM homeobox transcription factor 1 beta, LIM-homeobox protein 1.2, LIM/homeobox protein LMX1B, LMX-1.2, LMX1.1, LMX1.2, Lmx1b |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | O88609 |
| Description: | LIM homeobox transcription factor 1 beta |
| Length: | 93 |
| Pfam Domains: | 17-73 Homeobox domain 41-69 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 SQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 60 61 QVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQE |
| Interface Residues: | 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73, 76, 77 |
| 3D-footprint Homologues: | 3d1n_M, 5zfz_A, 1ig7_A, 1puf_A, 6a8r_A, 3cmy_A, 2h1k_B, 1fjl_B, 1zq3_P, 6m3d_C, 1jgg_B, 3lnq_A, 2lkx_A, 7q3o_C, 6es3_K, 4xrs_G, 2hdd_A, 1b72_A, 4cyc_A, 2r5y_A, 3l1p_A, 2hos_A, 2d5v_B, 5hod_A, 1au7_A, 3rkq_B, 2ld5_A, 5jlw_D, 7xrc_C, 2xsd_C, 1e3o_C, 1le8_A, 1nk2_P, 5flv_I, 1o4x_A, 8g87_X, 1du0_A, 5zjt_E, 4qtr_D, 7psx_B, 4xrm_B, 1puf_B |
| Binding Motifs: | UP00169A_1 rrwwwTTAATTAAtwyb |
| Binding Sites: | AAATTAAT AATAATTA AATTAAAA AATTAAAT AATTAATA AATTAATT ACTAATTA ATAATTAA ATAATTAG ATTAATAA ATTAATTA CTAATTAA CTAATTAG CTTAATTA GCTAATTA GTAATTAA GTTAATTA TAATTAAA TAATTAGA TTATTAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.