DNA Binding Motif

						

			
Accessions: UP00625D_1 (UniPROBE 20160601)

			
Names: Homeodomain protein RINX, KTCN, PPCD, PPD, Retinal inner nuclear layer homeobox protein, Transcription factor VSX1, visual system homeobox 1, VSX1_R166Q_R1
Organisms: Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: aAkrtsrCTAATTAGcgrthgw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.42   0.21   0.14   0.24      a
02   0.73   0.09   0.06   0.12      A
03   0.18   0.14   0.40   0.27      k
04   0.45   0.07   0.28   0.20      r
05   0.25   0.20   0.21   0.35      t
06   0.10   0.37   0.31   0.22      s
07   0.31   0.18   0.46   0.06      r
08   0.07   0.80   0.03   0.10      C
09      0   0.21      0   0.78      T
10   0.98   0.01   0.01      0      A
11   0.99      0      0   0.01      A
12   0.01      0      0   0.99      T
13      0   0.01   0.01   0.98      T
14   0.78      0   0.21      0      A
15   0.10   0.03   0.80   0.07      G
16   0.08   0.47   0.21   0.23      c
17   0.14   0.23   0.46   0.18      g
18   0.40   0.20   0.32   0.08      r
19   0.24   0.23   0.22   0.31      t
20   0.26   0.29   0.12   0.32      h
21   0.19   0.16   0.44   0.22      g
22   0.27   0.16   0.11   0.46      w
Binding TFs: UP00625D (Homeobox domain)
Binding Sites: GGTAATTA
ACCAATTA
ACTAATTA
AGTAATTA
ATAATTAG
ATAATTGG
ATTAATTA
CCAATTAA
CCAATTAG
CCTAATTA
CTAATTAA
CTAATTAC
CTAATTAG
CTTAATTA
GATAATTA
GCTAATTA
GTAATTAC
GTTAATTA
TAATTAGA
TTAATTAA
			
Publications: Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science 351:1450-4 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.