DNA Binding Motif
| Accessions: | UP00507A_1 (UniPROBE 20160601) |
| Names: | 153515_at, 99B, CG1897, Dmel\CG1897, l(3)FA30, ltt, Msh, msh-1, msh1, Msx, Muscle segmentation homeobox, Protein drop, Protein msh |
| Organisms: | Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | tarcrsCrCyAATTAgygywyy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.17 0.24 0.15 0.45 t 02 0.43 0.19 0.22 0.16 a 03 0.32 0.23 0.32 0.13 r 04 0.21 0.37 0.25 0.18 c 05 0.29 0.24 0.28 0.19 r 06 0.19 0.33 0.36 0.12 s 07 0.10 0.70 0.14 0.06 C 08 0.61 0.09 0.29 0.01 r 09 0.02 0.73 0.14 0.11 C 10 0 0.45 0 0.55 y 11 0.98 0.02 0 0 A 12 0.99 0 0 0 A 13 0.01 0 0 0.99 T 14 0 0 0 0.99 T 15 0.83 0 0.16 0 A 16 0.17 0.13 0.62 0.08 g 17 0.06 0.50 0.06 0.38 y 18 0.14 0.14 0.47 0.24 g 19 0.09 0.31 0.19 0.42 y 20 0.41 0.06 0.03 0.50 w 21 0.20 0.41 0.11 0.27 y 22 0.22 0.27 0.20 0.32 y |
| Binding TFs: | UP00507A (Homeobox domain) |
| Binding Sites: | GGTAATTA ACCAATTA ACTAATTA AGCAATTA AGTAATTA ATAATTAC ATAATTAG ATAATTGG ATTAATTA CAATTAAA CCAATTAA CCAATTAG CCTAATTA CTAATTAA CTAATTAC CTAATTAG GATAATTA GCAATTAA GCTAATTA GTAATTAA |
| Publications: | Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM. Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity. Development 139:1164-74 (2012). [Pubmed] |
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