Transcription Factor
| Accessions: | UP00274A (UniPROBE 20160601) |
| Names: | Homeobox protein YOX1, YML027W, Yox1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P34161 |
| Description: | Homeodomain-containing transcriptional repressor, binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycl... |
| Length: | 157 |
| Pfam Domains: | 51-107 Homeobox domain |
| Sequence: (in bold interface residues) | 1 KNDILTPLSAAKSIIIPSASKEKRRAFAFITHSQETFPKKEPKIDNAPLARRKRRRTSSQ 60 61 ELSILQAEFEKCPAPSKEKRIELAESCHMTEKAVQIWFQNKRQAVKRQRIATSKSTTIIQ 120 121 TVSPPSPPLDVHATPLASRVKADILRDGSSCSRSSSS |
| Interface Residues: | 51, 52, 53, 54, 55, 56, 92, 93, 95, 96, 99, 100, 103, 104, 105, 106, 107, 109 |
| 3D-footprint Homologues: | 5zfz_A, 4j19_B, 1fjl_B, 3cmy_A, 6a8r_A, 3lnq_A, 2lkx_A, 1zq3_P, 3d1n_M, 1nk2_P, 2h1k_B, 2ld5_A, 2h8r_B, 1puf_B, 5hod_A, 3rkq_B, 3a01_E, 3l1p_A, 5jlw_D, 1e3o_C, 1le8_A, 1au7_A, 1ig7_A, 7q3o_C, 2xsd_C, 7xrc_C, 6m3d_C, 5flv_I, 8g87_X, 5zjt_E, 4qtr_D, 2hdd_A, 7psx_B, 1b72_A, 2r5y_A, 4xrm_B, 1o4x_A, 1du0_A, 4cyc_A, 1jgg_B, 6es3_K, 4xrs_G, 1puf_A, 2hos_A |
| Binding Motifs: | UP00274A_1 ttsmmaYTAATTARwwwmks |
| Binding Sites: | AATTAATA AATTAATT ACTAATTA ATAAATTA ATAATTAA ATTAATTA ATTAATTG CTAATTAA CTAATTAG CTTAATTA GCAATTAA GCTAATTA GTAATTAA GTAATTTA GTTAATTA TAAATTAA TAATTAAA TAATTTAA TCAATTAA TTAATTAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.