DNA Binding Motif
| Accessions: | UP00237A_1 (UniPROBE 20160601) |
| Names: | Homeobox protein orthopediaÂ, orthopedia homolog (Drosophila), Otp |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | cryarTTAATTAAykkg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.23 0.38 0.21 0.18 c 02 0.31 0.20 0.34 0.16 r 03 0.15 0.36 0.12 0.38 y 04 0.41 0.18 0.18 0.23 a 05 0.47 0.10 0.39 0.04 r 06 0.01 0.12 0 0.88 T 07 0.01 0.04 0 0.96 T 08 0.98 0.01 0.01 0 A 09 0.98 0 0.01 0 A 10 0 0.01 0 0.98 T 11 0 0.01 0.01 0.98 T 12 0.96 0 0.04 0.01 A 13 0.88 0 0.12 0.01 A 14 0.06 0.42 0.09 0.43 y 15 0.23 0.10 0.28 0.38 k 16 0.22 0.18 0.35 0.25 k 17 0.12 0.12 0.60 0.15 g |
| Binding TFs: | UP00237A (Homeobox domain) |
| Binding Sites: | AATAATTA AATTAATT AATTAGTG ACTAATTA AGTAATTA ATAATTAA ATAATTAG ATTAATTA CATAATTA CCTAATTA CTAATTAA CTAATTAC CTAATTAG CTTAATTA GCTAATTA GTAATTAA GTTAATTA TAATTAAA TAATTAGA TAATTATA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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