DNA Binding Motif
| Accessions: | UP00218A_1 (UniPROBE 20160601) |
| Names: | 9630005K15, AI846217, Dbx2, developing brain homeobox 2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | bktmAtTAATkAakwm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.14 0.27 0.27 0.33 b 02 0.24 0.09 0.32 0.35 k 03 0.22 0.24 0.20 0.33 t 04 0.44 0.29 0.04 0.22 m 05 0.70 0.07 0.08 0.15 A 06 0.18 0.12 0.10 0.61 t 07 0.06 0.12 0 0.82 T 08 0.93 0.01 0.02 0.04 A 09 0.95 0.01 0.02 0.02 A 10 0.03 0 0.01 0.96 T 11 0.03 0.02 0.29 0.67 k 12 0.73 0.01 0.15 0.11 A 13 0.44 0.11 0.20 0.24 a 14 0.04 0.09 0.28 0.59 k 15 0.27 0.16 0.14 0.43 w 16 0.28 0.35 0.17 0.20 m |
| Binding TFs: | UP00218A (Homeobox domain) |
| Binding Sites: | GGTAATTA AAATTAAT AATAATTA AATTAATA AATTAATG AATTAATT ACTAATTA AGTAATTA ATAATTAA ATAATTAT ATCAATTA ATTAATGA ATTAATTG CATTAATG CTAATTAA CTAATTAG GTAATTAA GTAATTAC TAATTAAA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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