footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	AATAATTA (UniPROBE 20160601)
Organisms:	Mus musculus, Saccharomyces cerevisiae, Drosophila melanogaster, Homo sapiens
Libraries:	UniPROBE 20160601 ¹ ¹ Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length:	8
Sequence:	AATAATTA
Type:	Heterodimer
Binding TFs:	UP00224A (Homeobox domain, 'Paired box' domain) UP00263A (Homeobox domain) UP00063A / UP00391A (Homeobox domain) UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00106A (Homeobox domain) UP00108A (Homeobox domain) UP00110A (Homeobox domain) UP00113A (Homeobox domain) UP00115A (Homeobox domain, Homeobox KN domain) UP00116A (Homeobox domain) UP00121A (Homeobox domain) UP00123A (Homeobox domain) UP00126A (Homeobox domain) UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00130A (Homeobox domain, Homeobox KN domain) UP00131A (Homeobox domain) UP00138A (Homeobox domain) UP00139A (Homeobox domain) UP00140A (Homeobox domain) UP00141A (Homeobox domain) UP00142A (Homeobox domain) UP00144A (Homeobox domain) UP00149A (Homeobox domain) UP00151A (Homeobox domain) UP00152A (Homeobox domain) UP00154A (Homeobox domain) UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00162A (Homeobox domain) UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00168A (Homeobox domain) UP00169A (Homeobox domain, Homeobox KN domain) UP00171A (Homeobox domain) UP00172A (Homeobox domain, Homeobox KN domain) UP00175A (Homeobox domain, Homeobox KN domain) UP00182A (Homeobox domain) UP00187A (Homeobox domain) UP00188A (Homeobox domain, Homeobox KN domain) UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00196A (Homeobox domain) UP00200A (Homeobox domain) UP00201A (Homeobox domain) UP00202A (Homeobox domain) UP00204A (Homeobox domain) UP00206A (Homeobox domain) UP00212A (Homeobox domain, Homeobox KN domain) UP00215A (Homeobox domain) UP00218A (Homeobox domain) UP00221A (Homeobox domain) UP00225A (Homeobox domain) UP00230A (Homeobox domain) UP00233A (Homeobox domain) UP00234A (Homeobox domain) UP00237A (Homeobox domain) UP00238A (Homeobox domain) UP00242A (Homeobox domain) UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00251A (Homeobox domain) UP00252A (Homeobox domain) UP00253A (Homeobox domain) UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00255A (Homeobox domain) UP00259A (Homeobox domain) UP00260A (Homeobox domain) UP00262A (Homeobox domain, Homeobox KN domain) UP00268A (Homeobox domain) UP00341A UP00164A (Homeobox domain) UP00209A (Homeobox domain, Homeobox KN domain) UP00256A (Homeobox domain, Homeobox KN domain) UP00505A (Homeobox domain) UP00512A (Homeobox domain) UP00584E (Homeobox domain) UP00589F (Fork head domain) UP00603B (Homeobox domain) UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00626C (Homeobox domain)
Binding Motifs:	UP00259A_1 wwtksgTAATTACsdy UP00200A_2 rrtwATTAATKAykyc UP00255A_1 twrttaATTAwtaawwr UP00063A_1 tkgagbTAATTAry UP00105A_1 rmttAATTAATTAadtc UP00106A_1 kwvcryTAATTArkrc UP00108A_1 wawayTAATTAryTsav UP00110A_1 bcrcdaTAATTAcmswc UP00113A_1 CgmrTTAATTAAywawm UP00115A_1 waaayTAATTArykmhs UP00116A_1 wrcmyTAATTArtkswy UP00140A_2 ywarGTCGTAAAawyht UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00123A_1 kkmsTAATTAGkgshv UP00126A_1 vrdrYAATTRbhymag UP00128A_1 swtAaTTAATTArkkyr UP00129A_1 rmyTAATTAATTAaktm UP00130A_1 sdaaTTAATTAAwwmmk UP00131A_1 dscrCTAATTAGysrkt UP00138A_1 vmrgyAATTrsytsAd UP00139A_1 dtbcryYAATTRrtrcw UP00140A_5 wraryTAATTArytgkw UP00141A_1 csaryTAATTAryratt UP00142A_1 vataaTTAATTAAygsg UP00144A_1 cgmrTTAATTAAtwahy UP00149A_1 vrkaaTTAATTAAyrsg UP00151A_1 taakYAATTRrtkrtr UP00152A_1 gtscryTAATTArtksw UP00154A_1 kmrmdaTAATTAcmswm UP00158A_1 rrwtAATTAATTAwgtc UP00162A_1 wvarcTAATTAgygswc UP00163A_1 wgmmyYAATTRrygrah UP00164A_1 sgmrtTAATTAatwagc UP00167A_1 gsvAAcTAATTArkgc UP00168A_1 taadTAATTAATrgctw UP00169A_1 rrwwwTTAATTAAtwyb UP00171A_1 mamAAcyAATTAAktw UP00172A_1 cgmrTTAATTAAkwdac UP00175A_1 csyayTAATTArtymcy UP00140A_3 ywavGTCGTAAAatywt UP00140A_4 mwwyyAATAAAAhymh UP00182A_1 amgkTAATTACcymak UP00187A_1 cgcryTAATTArthasc UP00188A_1 sgawTTAATTAAwwwyy UP00191A_1 ywkTATGCWAATkara UP00196A_1 grttrtTAATTAackbg UP00200A_1 gmwwATTAATTAmyybg UP00201A_1 wvmrCTAATTAGykshy UP00202A_1 btgarrTAATTAay UP00204A_1 wdsmaCYAATTRGtgbw UP00206A_1 stakTAATTAmtkshr UP00209A_1 cgmryTAATTArtymcy UP00212A_1 sraaTTAATTAAwwamy UP00215A_1 asgtTAATTAvcyyag UP00218A_1 bktmAtTAATkAakwm UP00221A_1 yrkmAyTAATTAryrv UP00224A_1 TrayTAATTArtkvac UP00225A_1 cmaTAATTrATTAym UP00230A_1 ssrgyAATTrsykmts UP00233A_1 rvkgTAATTAsmycAg UP00234A_1 krmwayTAATTAatwm UP00237A_1 cryarTTAATTAAykkg UP00238A_1 gawwwTTAATKAmtkyk UP00242A_1 twkrrgTAATTAhykt UP00248A_1 mgwmyTAATTArkwmda UP00251A_1 wwycryTAATTArtksw UP00252A_1 cgmrtTAATTAatwayt UP00253A_1 wscayYAATTRryssmy UP00254A_1 dtdwrwTAATTArktw UP00256A_1 swrcryTAATTArkkyw UP00260A_1 yrarkTAATTAmtwamw UP00262A_1 mgwaTTAATTAAwwahk UP00263A_1 wsykGyAATTAAtarw UP00268A_1 cgyddwtTAATTAawksgrm UP00341A_1 ryarwwAWwWWwWTwywawm UP00391A_1 tygmrbTAATTAry UP00063A_2 aarawCbATTArsr UP00164A_2 kkmkTAATTAmkggmm UP00209A_2 crmrTTAATTAAttgrm UP00256A_2 wmcrCTAATTAGcggwk UP00505A_1 mmtwvasCTAATTAGygrdrct UP00512A_1 aawraarGGTAATTAmydkwkw UP00584E_2 wymdwkgkTAATTAwcmwatwaw UP00589F_1 ccyscrchAAmaaaaadrgmah UP00603B_1 wtwtrtgyAATTAwttaaktysw UP00616B_1 hkwrythATTATGCRgayakhm UP00616C_1 kgacgyyyTAATTArwcrtcrr UP00626C_1 tmmmamvTTAATTAAkwrtmtg
Publications:	Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

User:
Password:
	Register