DNA Binding Motif
| Accessions: | UP00140A_5 (UniPROBE 20160601) |
| Names: | homeo box D1, Homeobox protein Hox-D1, Hox-4.9, Hoxd-1, Hoxd1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | wraryTAATTArytgkw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.39 0.05 0.11 0.46 w 02 0.46 0.16 0.28 0.10 r 03 0.41 0.23 0.13 0.24 a 04 0.40 0.15 0.40 0.05 r 05 0.04 0.45 0.21 0.30 y 06 0.01 0.14 0 0.85 T 07 0.92 0.07 0.01 0 A 08 0.99 0 0 0.01 A 09 0.01 0 0 0.99 T 10 0 0.01 0.07 0.92 T 11 0.85 0 0.14 0.01 A 12 0.30 0.21 0.45 0.04 r 13 0.04 0.58 0.10 0.28 y 14 0.07 0.08 0.19 0.66 t 15 0.22 0.22 0.32 0.24 g 16 0.23 0.17 0.27 0.32 k 17 0.32 0.20 0.18 0.30 w |
| Binding TFs: | UP00140A (Homeobox domain) |
| Binding Sites: | TAATAAAA AATAAAAT AATAATTA AATTAATA ATAATAAA ATAATTAA ATAATTAC ATTAATGA ATTAATTA ATTTAATG CATAAAAA GCAATAAA GTAATAAA GTCATAAA GTCATTAA GTCGTAAA TAATTAAA TCATAAAA TCATTAAA TCGTAAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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