Transcription Factor
| Accessions: | UP00255A (UniPROBE 20160601) |
| Names: | AI426026, Dbx1, developing brain homeobox 1, Homeobox protein DBX1, Mmox C |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P52950 |
| Description: | developing brain homeobox 1 |
| Length: | 93 |
| Pfam Domains: | 19-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 GTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKTFQKQKYISKPDRKKLASKLGLKDSQV 60 61 KIWFQNRRMKWRNSKERELLSSGGCREQTLPTK |
| Interface Residues: | 15, 17, 18, 19, 20, 38, 58, 59, 61, 62, 65, 66, 69, 70, 73, 85, 88 |
| 3D-footprint Homologues: | 1zq3_P, 5zfz_A, 3d1n_M, 1nk2_P, 2ld5_A, 2d5v_B, 1jgg_B, 5hod_A, 1puf_A, 6a8r_A, 3a01_E, 2h1k_B, 7psx_B, 1au7_A, 5jlw_D, 3lnq_A, 2lkx_A, 1fjl_B, 6es3_K, 4xrs_G, 3cmy_A, 2hdd_A, 7q3o_C, 1b72_A, 3rkq_B, 2r5y_A, 1ig7_A, 6m3d_C, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 7n8n_A, 1e3o_C, 1le8_A, 7xrc_C, 2xsd_C, 3l1p_A, 8g87_X, 4qtr_D, 1puf_B, 1o4x_A, 1du0_A |
| Binding Motifs: | UP00255A_1 twrttaATTAwtaawwr |
| Binding Sites: | TAATAAAA AATAATAA AATAATTA AATATATT AATTAATA AATTAATG ACTAATTA ATAAATTA ATAATTAA ATAATTAC ATAATTAT ATCAATTA ATTAATGA ATTAATTA ATTAATTG CTAATTAG TAATAATA TAATTATA TCAATTAA TCATTAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.