DNA Binding Motif
| Accessions: | UP00151A_1 (UniPROBE 20160601) |
| Names: | 2310006E12Rik, BarH-like homeobox 2, Barx2, Barx2b, Homeobox protein BarH-like 2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | taakYAATTRrtkrtr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.19 0.15 0.15 0.51 t 02 0.51 0.17 0.12 0.20 a 03 0.63 0.11 0.23 0.02 a 04 0.11 0.20 0.39 0.31 k 05 0.01 0.27 0 0.72 Y 06 0.96 0.03 0 0.01 A 07 0.98 0.01 0 0.01 A 08 0.01 0 0.01 0.98 T 09 0.01 0 0.03 0.96 T 10 0.72 0 0.27 0.01 R 11 0.27 0.23 0.35 0.15 r 12 0.02 0.23 0.11 0.63 t 13 0.10 0.10 0.38 0.42 k 14 0.34 0.10 0.32 0.24 r 15 0.18 0.20 0.11 0.52 t 16 0.38 0.11 0.33 0.17 r |
| Binding TFs: | UP00151A (Homeobox domain) |
| Binding Sites: | GGTAATTA AACAATTA AATAATTA ACCAATTA ACTAATTA AGCAATTA AGTAATTA ATAATTAC ATTAATTA ATTAATTG CAATTAAA CAATTAAC CTAATTAG CTAATTGC GACAATTA GATAATTA GCAATTAA GCTAATTA GGCAATTA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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