DNA Binding Motif
| Accessions: | UP00117A_1 (UniPROBE 20160601), UP00140A_2 (UniPROBE 20160601) |
| Names: | homeo box D11, Homeobox protein Hox-D11, Hox-4.6, Hox-5.4, Hox-5.5, Hoxd-11, Hoxd11, homeo box D1, Homeobox protein Hox-D1, Hox-4.9, Hoxd-1, Hoxd1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | ywarGTCGTAAAawyht |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.30 0.07 0.43 y 02 0.38 0.24 0.12 0.26 w 03 0.43 0.15 0.23 0.18 a 04 0.32 0.19 0.33 0.16 r 05 0.08 0.06 0.86 0 G 06 0 0.02 0 0.97 T 07 0.01 0.98 0 0.01 C 08 0.17 0 0.82 0 G 09 0 0 0 0.99 T 10 0.84 0 0 0.16 A 11 0.98 0 0 0.01 A 12 0.98 0.01 0 0.01 A 13 0.63 0.16 0.02 0.19 a 14 0.28 0.19 0.12 0.41 w 15 0.23 0.35 0.15 0.27 y 16 0.25 0.30 0.17 0.28 h 17 0.18 0.16 0.20 0.47 t |
| Type: | Heterodimer |
| Binding TFs: | UP00117A (Homeobox domain) UP00140A (Homeobox domain) |
| Binding Sites: | TAATAAAA AATAAAAT AATAATTA AATTAATA ATAAAAAG ATAATAAA ATAATTAA ATAATTAC ATCGTAAA ATTAATGA ATTAATTA ATTTAATG ATTTACGA CAATAAAA CATAAAAA CCATAAAA CTCGTAAA GCAATAAA GGTCGTAA GTAATAAA GTCATAAA GTCATTAA GTCGTAAA GTCGTTAA GTTTACGA TAATTAAA TCATAAAA TCATTAAA TCGTAAAA ATTAACGA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.