footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	AATTAATA (UniPROBE 20160601)
Organisms:	Mus musculus, Saccharomyces cerevisiae, Homo sapiens
Libraries:	UniPROBE 20160601 ¹ ¹ Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length:	8
Sequence:	AATTAATA
Type:	Heterodimer
Binding TFs:	UP00453A (bZIP transcription factor, Transcription factor PAP1) UP00325A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00263A (Homeobox domain) UP00012A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00078A (ARID/BRIGHT DNA binding domain) UP00082A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00096A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00116A (Homeobox domain) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00121A (Homeobox domain) UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00130A (Homeobox domain, Homeobox KN domain) UP00140A (Homeobox domain) UP00168A (Homeobox domain) UP00169A (Homeobox domain, Homeobox KN domain) UP00180A (Homeobox domain) UP00188A (Homeobox domain, Homeobox KN domain) UP00197A (Homeobox domain) UP00200A (Homeobox domain) UP00212A (Homeobox domain, Homeobox KN domain) UP00213A (Homeobox domain) UP00217A (Homeobox domain) UP00218A (Homeobox domain) UP00225A (Homeobox domain) UP00234A (Homeobox domain) UP00238A (Homeobox domain) UP00242A (Homeobox domain) UP00244A (Homeobox domain) UP00246A (Homeobox domain) UP00247A (Homeobox domain, 'Paired box' domain) UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00251A (Homeobox domain) UP00252A (Homeobox domain) UP00255A (Homeobox domain) UP00259A (Homeobox domain) UP00260A (Homeobox domain) UP00262A (Homeobox domain, Homeobox KN domain) UP00264A (Homeobox domain) UP00268A (Homeobox domain) UP00274A (Homeobox domain) UP00294A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00341A UP00164A (Homeobox domain) UP00584E (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00599D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00604D (Homeobox domain) UP00604E (Homeobox domain) UP00606B (Zinc finger, C4 type (two domains)) UP00611D (Homeobox domain, 'Paired box' domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00615D (Homeobox domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00626B (Homeobox domain) UP00627C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627F (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627G (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Motifs:	UP00259A_1 wwtksgTAATTACsdy UP00200A_2 rrtwATTAATKAykyc UP00255A_1 twrttaATTAwtaawwr UP00012A_1 taaTTCAwTGAAswd UP00078A_1 sgktTTAATTAAwmtwy UP00082A_1 ytATGTACyAATwm UP00096A_1 wtwrgAACAATwwwtw UP00116A_1 wrcmyTAATTArtkswy UP00140A_2 ywarGTCGTAAAawyht UP00118A_1 wrtwATTAATkArkyc UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00128A_1 swtAaTTAATTArkkyr UP00130A_1 sdaaTTAATTAAwwmmk UP00140A_5 wraryTAATTArytgkw UP00164A_1 sgmrtTAATTAatwagc UP00168A_1 taadTAATTAATrgctw UP00169A_1 rrwwwTTAATTAAtwyb UP00140A_3 ywavGTCGTAAAatywt UP00140A_4 / UP00180A_1 mwwyyAATAAAAhymh UP00264A_3 wwwbCTCGTAAAawtt UP00188A_1 sgawTTAATTAAwwwyy UP00197A_1 rkagGTMATWAAyydk UP00200A_1 gmwwATTAATTAmyybg UP00212A_1 sraaTTAATTAAwwamy UP00213A_1 rcggycATwAAAwtadw UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw UP00218A_1 bktmAtTAATkAakwm UP00225A_1 cmaTAATTrATTAym UP00234A_1 krmwayTAATTAatwm UP00238A_1 gawwwTTAATKAmtkyk UP00242A_1 twkrrgTAATTAhykt UP00244A_1 kwatyAATTAATaayww UP00246A_1 / UP00264A_2 waarGTCRTAAAayrk UP00247A_1 wsawyTAATTAryysdm UP00248A_1 mgwmyTAATTArkwmda UP00251A_1 wwycryTAATTArtksw UP00252A_1 cgmrtTAATTAatwayt UP00260A_1 yrarkTAATTAmtwamw UP00262A_1 mgwaTTAATTAAwwahk UP00263A_1 wsykGyAATTAAtarw UP00264A_4 ctrarcTAATTAmyky UP00268A_1 cgyddwtTAATTAawksgrm UP00274A_1 ttsmmaYTAATTARwwwmks UP00294A_1 tkacctwtAATTawaybwsmw UP00325A_1 yttwyywwTATAwwwwrkdv UP00341A_1 ryarwwAWwWWwWTwywawm UP00012A_2 tvwybGTTAACaswkrr UP00096A_2 rtrytGGgtGGGwawwt UP00078A_2 hmmvrtATcrdrtyk UP00082A_2 grrmCCTtGTyCmywv UP00164A_2 kkmkTAATTAmkggmm UP00453A_1 / UP00453A_2 ttswwwgATTAsTAATmdwavwr UP00453A_3 ATTACGTAA UP00584E_1 tkacggwtTAATTAatywtckk UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00599D_1 TamtwwTAATawATTAtbtwtm UP00604D_1 amaTtawatavrtatwywaTwa UP00604E_1 tawwywATrTwwATtAwytaAA UP00606B_1 wwmrrawtrAttwAtArtwmAAt UP00611D_1 whwydkgkTAATTAkcawawwaw UP00613B_1 aakrbywcTAATTAgwrcymsh UP00613B_2 ykwmrwctTAATTAaratysrr UP00615D_1 twyktwwmsTAATTAykmmcawa UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak UP00626B_1 ygwwwhwttTwATATagwaawaw UP00627C_1 TwtTwawATAmAwATAAwwThkG UP00627D_1 kwtwywwCCCCCGCAyrwkyww UP00627F_1 TwtTwmwATAmAwATAAwwtwkG UP00627G_1 TwtTtawATAmAwATAAwwThkG
Publications:	Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

User:
Password:
	Register