Transcription Factor
| Accessions: | UP00197A (UniPROBE 20160601) |
| Names: | homeo box C9, Homeobox protein Hox-C9, Hox-3.2, Hoxc-9, Hoxc9 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P09633 |
| Description: | homeo box C9 |
| Length: | 84 |
| Pfam Domains: | 17-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 LDPSNPVANWIHARSTRKRRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQV 60 61 KIWFQNRRMKMKKMNKEKTDKEQS |
| Interface Residues: | 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73 |
| 3D-footprint Homologues: | 3d1n_M, 1ig7_A, 6a8r_A, 1puf_A, 3cmy_A, 5zfz_A, 1fjl_B, 6m3d_C, 1nk2_P, 1zq3_P, 2lkx_A, 2ld5_A, 7q3o_C, 6es3_K, 5flv_I, 2hos_A, 1b72_A, 5zjt_E, 4cyc_A, 7psx_B, 3a01_E, 2h1k_B, 1jgg_B, 5jlw_D, 3lnq_A, 4xrs_G, 2hdd_A, 1au7_A, 3rkq_B, 2r5y_A, 1puf_B, 2xsd_C, 1e3o_C, 1le8_A, 7xrc_C, 8g87_X, 5hod_A, 3l1p_A, 1o4x_A, 1du0_A, 4qtr_D |
| Binding Motifs: | UP00197A_1 rkagGTMATWAAyydk |
| Binding Sites: | TAATAAAA GGTAATTA AATTAATA AATTAATG AGTAATTA ATAATTAA ATAATTAC ATTAATGA ATTAATTA CAATAAAA CCATAAAA GCAATAAA GCAATTAA GCCATTAA GTAATAAA GTAATTAA GTAATTAC GTCATAAA GTCGTAAA TCATTAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.