DNA Binding Motif
| Accessions: | UP00246A_1 (UniPROBE 20160601), UP00264A_2 (UniPROBE 20160601) |
| Names: | homeo box A11, Homeobox protein Hox-A11, Hox-1.9, Hoxa-11, Hoxa11, early retinoic acid, Early retinoic acid 1, Era-1, ERA1, homeo box A1, Homeobox protein Hox-A1, Homeoboxless protein ERA-1-399, Homeotic protein ERA-1-993, Hox-1.6, Hoxa-1, Hoxa1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | waarGTCRTAAAayrk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.25 0.21 0.14 0.40 w 02 0.49 0.12 0.20 0.19 a 03 0.54 0.15 0.14 0.17 a 04 0.43 0.10 0.27 0.20 r 05 0.10 0.05 0.85 0 G 06 0 0.02 0 0.98 T 07 0.02 0.97 0 0.01 C 08 0.26 0 0.74 0 R 09 0 0 0 0.99 T 10 0.83 0 0 0.16 A 11 0.98 0 0 0.01 A 12 0.98 0.01 0 0.01 A 13 0.60 0.09 0.09 0.22 a 14 0.21 0.40 0.11 0.27 y 15 0.29 0.22 0.25 0.24 r 16 0.15 0.15 0.31 0.39 k |
| Type: | Heterodimer |
| Binding TFs: | UP00246A (Homeobox domain) UP00264A (Homeobox domain) |
| Binding Sites: | TAATAAAA AATAAAAC AATAAAAT AATTAATA ATAATAAA ATCGTAAA ATTAATTA ATTTACGA ATTTTATG CAATAAAA CATAAAAA CCATAAAA CTCGTAAA GCAATAAA GCAATTAA GTAATAAA GTAATTAA GTCATAAA GTCATTAA GTCGTAAA GTCGTTAA TAATTAAA TCATAAAA TCATTAAA TCGTAAAA TCGTTAAA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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