DNA Binding Site
| Accessions: | TCGTAAAA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | TCGTAAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00235A (Homeobox domain, Protein of unknown function (DUF3528)) UP00117A (Homeobox domain) UP00121A (Homeobox domain) UP00134A (Homeobox domain) UP00135A (Homeobox domain) UP00140A (Homeobox domain) UP00173A (Homeobox domain, Homeobox KN domain) UP00177A (Homeobox domain) UP00180A (Homeobox domain) UP00183A (Homeobox domain) UP00207A (Homeobox domain) UP00217A (Homeobox domain) UP00245A (Homeobox domain) UP00246A (Homeobox domain) UP00264A (Homeobox domain) UP00597A (Homeobox domain) UP00597B (Homeobox domain) UP00597C (Homeobox domain, Homeobox KN domain) UP00597D (Homeobox domain) UP00597G (Homeobox domain) UP00597H (Homeobox domain) |
| Binding Motifs: | UP00117A_1 / UP00140A_2 ywarGTCGTAAAawyht UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00134A_1 mrmCyAATAAAAwwys UP00135A_1 ywrgGTCGTAAAwwywc UP00140A_5 wraryTAATTArytgkw UP00173A_1 wwwkCTCrTAAAawtw UP00140A_3 / UP00177A_1 ywavGTCGTAAAatywt UP00140A_4 / UP00180A_1 mwwyyAATAAAAhymh UP00183A_1 / UP00264A_3 wwwbCTCGTAAAawtt UP00207A_1 rrrgymATWAAAwycr UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw UP00235A_1 yaarGTCGTAAAayrk UP00245A_1 twarGTCRTAAAaysk UP00246A_1 / UP00264A_2 waarGTCRTAAAayrk UP00264A_4 ctrarcTAATTAmyky UP00597A_1 ykrsmthymATWAAawvcmgth UP00597A_2 ckyaawkCTCrTAAAawyrdmw UP00597B_1 tksmrytyaATAAAAwwcdmtt UP00597C_1 hmdywrsCTCGTWAAatmwtwa UP00597C_2 yhgyarssTCGTAAAatywtma UP00597D_1 tkswwyyyaATAAAAwwcmmtt UP00597G_1 wwtaaryYAATAAAAwtcwmww UP00597G_2 wrkmrayYAATAAAAwwcwmtt UP00597H_1 kksmrcyyAATAAAAwwmavtt UP00597H_2 cwdwwwkCTCrTAAAawtdgmd |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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