DNA Binding Motif
| Accessions: | UP00245A_1 (UniPROBE 20160601) |
| Names: | AI506621, homeo box C10, Homeobox protein Hox-C10, Hox-3.6, Hoxc-10, Hoxc10 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | twarGTCRTAAAaysk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.24 0.24 0.13 0.39 t 02 0.39 0.12 0.24 0.25 w 03 0.43 0.16 0.18 0.23 a 04 0.34 0.14 0.29 0.23 r 05 0.08 0.06 0.86 0 G 06 0 0.04 0 0.96 T 07 0.02 0.98 0 0 C 08 0.30 0 0.70 0 R 09 0 0 0 0.99 T 10 0.85 0 0 0.14 A 11 0.99 0 0 0.01 A 12 0.98 0.01 0 0.01 A 13 0.50 0.13 0.15 0.23 a 14 0.22 0.33 0.15 0.30 y 15 0.21 0.26 0.29 0.25 s 16 0.14 0.15 0.30 0.41 k |
| Binding TFs: | UP00245A (Homeobox domain) |
| Binding Sites: | TAATAAAA GGTAATTA ATAATTAC ATCGTAAA ATTTTATG CAATAAAA CCATAAAA CCCATAAA CTCGTAAA GCAATAAA GGTCGTAA GGTCGTTA GTAATAAA GTAATTAC GTCATAAA GTCATTAA GTCGTTAA GTTTACGA TCATAAAA TCGTAAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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