Transcription Factor
| Accessions: | UP00217A (UniPROBE 20160601) |
| Names: | homeo box A10, Homeobox protein Hox-A10, Hox-1.8, Hoxa-10, Hoxa10 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P31310 |
| Description: | homeo box A10 |
| Length: | 90 |
| Pfam Domains: | 17-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 SSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQV 60 61 KIWFQNRRMKLKKMNRENRIRELTANFNFS |
| Interface Residues: | 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73 |
| 3D-footprint Homologues: | 2h1k_B, 5zfz_A, 1puf_A, 3cmy_A, 1fjl_B, 3d1n_M, 6a8r_A, 1ig7_A, 6m3d_C, 2lkx_A, 1nk2_P, 1zq3_P, 7q3o_C, 2ld5_A, 6es3_K, 3a01_E, 1jgg_B, 7psx_B, 3rkq_B, 5flv_I, 2hdd_A, 5zjt_E, 4cyc_A, 2r5y_A, 1puf_B, 5hod_A, 2hos_A, 1b72_A, 5jlw_D, 3lnq_A, 4xrs_G, 1e3o_C, 1le8_A, 7xrc_C, 2xsd_C, 6fqp_B, 6fqq_E, 4qtr_D, 1o4x_A, 8g87_X, 1du0_A |
| Binding Motifs: | UP00217A_1 dmgGyMATWAAAtkmw |
| Binding Sites: | TAATAAAA AATAAAAT AATTAATA ATAATAAA ATTAATTA ATTTTATG CAATAAAA CCATAAAA GCAATAAA GCAATTAA GTAATAAA GTAATTAA GTCATAAA GTCATTAA GTCGTAAA TAATTAAA TCATAAAA TCATTAAA TCGTAAAA TTAATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.