DNA Binding Site
| Accessions: | TCATTAAA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | TCATTAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00235A (Homeobox domain, Protein of unknown function (DUF3528)) UP00117A (Homeobox domain) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00121A (Homeobox domain) UP00135A (Homeobox domain) UP00140A (Homeobox domain) UP00180A (Homeobox domain) UP00197A (Homeobox domain) UP00217A (Homeobox domain) UP00238A (Homeobox domain) UP00246A (Homeobox domain) UP00255A (Homeobox domain) UP00264A (Homeobox domain) UP00589D (Fork head domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00255A_1 twrttaATTAwtaawwr UP00117A_1 / UP00140A_2 ywarGTCGTAAAawyht UP00118A_1 wrtwATTAATkArkyc UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00135A_1 ywrgGTCGTAAAwwywc UP00140A_5 wraryTAATTArytgkw UP00140A_3 ywavGTCGTAAAatywt UP00140A_4 / UP00180A_1 mwwyyAATAAAAhymh UP00264A_3 wwwbCTCGTAAAawtt UP00197A_1 rkagGTMATWAAyydk UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw UP00235A_1 yaarGTCGTAAAayrk UP00238A_1 gawwwTTAATKAmtkyk UP00246A_1 / UP00264A_2 waarGTCRTAAAayrk UP00264A_4 ctrarcTAATTAmyky UP00589D_1 rwwygyrTwwAaTAwAwrdAwr UP00617D_1 thravkTTATTAATAwtktmak |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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