DNA Binding Site
| Accessions: | CAATAAAA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CAATAAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00235A (Homeobox domain, Protein of unknown function (DUF3528)) UP00117A (Homeobox domain) UP00133A (Homeobox domain) UP00134A (Homeobox domain) UP00135A (Homeobox domain) UP00173A (Homeobox domain, Homeobox KN domain) UP00177A (Homeobox domain) UP00183A (Homeobox domain) UP00197A (Homeobox domain) UP00207A (Homeobox domain) UP00213A (Homeobox domain) UP00217A (Homeobox domain) UP00225A (Homeobox domain) UP00240A (Homeobox domain) UP00245A (Homeobox domain) UP00246A (Homeobox domain) UP00264A (Homeobox domain) UP00503A (Homeobox domain) UP00597A (Homeobox domain) UP00597B (Homeobox domain) UP00597D (Homeobox domain) UP00597G (Homeobox domain) UP00597H (Homeobox domain) |
| Binding Motifs: | UP00117A_1 ywarGTCGTAAAawyht UP00133A_1 drvgGymATAAAayky UP00134A_1 mrmCyAATAAAAwwys UP00135A_1 ywrgGTCGTAAAwwywc UP00173A_1 wwwkCTCrTAAAawtw UP00177A_1 ywavGTCGTAAAatywt UP00183A_1 / UP00264A_3 wwwbCTCGTAAAawtt UP00197A_1 rkagGTMATWAAyydk UP00207A_1 rrrgymATWAAAwycr UP00213A_1 rcggycATwAAAwtadw UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw UP00225A_1 cmaTAATTrATTAym UP00235A_1 yaarGTCGTAAAayrk UP00240A_1 wrmGGYmATWAAatkw UP00245A_1 twarGTCRTAAAaysk UP00246A_1 / UP00264A_2 waarGTCRTAAAayrk UP00264A_4 ctrarcTAATTAmyky UP00503A_1 ggrarrgGymATWAAattyhba UP00597A_1 ykrsmthymATWAAawvcmgth UP00597A_2 ckyaawkCTCrTAAAawyrdmw UP00597B_1 tksmrytyaATAAAAwwcdmtt UP00597D_1 tkswwyyyaATAAAAwwcmmtt UP00597G_1 wwtaaryYAATAAAAwtcwmww UP00597G_2 wrkmrayYAATAAAAwwcwmtt UP00597H_1 kksmrcyyAATAAAAwwmavtt UP00597H_2 cwdwwwkCTCrTAAAawtdgmd |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.