DNA Binding Site

						

			
Accessions: AATAAAAT (UniPROBE 20160601)

			
Organisms: Mus musculus, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: AATAAAAT
Type: Heterodimer
Binding TFs: UP00235A (Homeobox domain, Protein of unknown function (DUF3528))
UP00117A (Homeobox domain)
UP00121A (Homeobox domain)
UP00133A (Homeobox domain)
UP00134A (Homeobox domain)
UP00135A (Homeobox domain)
UP00140A (Homeobox domain)
UP00173A (Homeobox domain, Homeobox KN domain)
UP00177A (Homeobox domain)
UP00180A (Homeobox domain)
UP00183A (Homeobox domain)
UP00207A (Homeobox domain)
UP00213A (Homeobox domain)
UP00217A (Homeobox domain)
UP00240A (Homeobox domain)
UP00246A (Homeobox domain)
UP00264A (Homeobox domain)
UP00597A (Homeobox domain)
UP00597B (Homeobox domain)
UP00597D (Homeobox domain)
UP00597F (Homeobox domain)
UP00597G (Homeobox domain)
UP00597H (Homeobox domain)
UP00627B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00627C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00627D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00627E (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00627F (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00627G (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Motifs: UP00117A_1 / UP00140A_2 ywarGTCGTAAAawyht
UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww
UP00133A_1 drvgGymATAAAayky
UP00134A_1 mrmCyAATAAAAwwys
UP00135A_1 ywrgGTCGTAAAwwywc
UP00140A_5 wraryTAATTArytgkw
UP00173A_1 wwwkCTCrTAAAawtw
UP00140A_3 / UP00177A_1 ywavGTCGTAAAatywt
UP00140A_4 / UP00180A_1 mwwyyAATAAAAhymh
UP00183A_1 / UP00264A_3 wwwbCTCGTAAAawtt
UP00207A_1 rrrgymATWAAAwycr
UP00213A_1 rcggycATwAAAwtadw
UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw
UP00235A_1 yaarGTCGTAAAayrk
UP00240A_1 wrmGGYmATWAAatkw
UP00246A_1 / UP00264A_2 waarGTCRTAAAayrk
UP00264A_4 ctrarcTAATTAmyky
UP00597A_1 ykrsmthymATWAAawvcmgth
UP00597A_2 ckyaawkCTCrTAAAawyrdmw
UP00597B_1 tksmrytyaATAAAAwwcdmtt
UP00597D_1 tkswwyyyaATAAAAwwcmmtt
UP00597F_2 yksaakmGTAYAAAAtwmawwv
UP00597G_1 wwtaaryYAATAAAAwtcwmww
UP00597G_2 wrkmrayYAATAAAAwwcwmtt
UP00597H_1 kksmrcyyAATAAAAwwmavtt
UP00597H_2 cwdwwwkCTCrTAAAawtdgmd
UP00627B_1 TwtTwawATAmAwATAAwwTwkG
UP00627C_1 TwtTwawATAmAwATAAwwThkG
UP00627D_1 kwtwywwCCCCCGCAyrwkyww
UP00627E_1 gassrATGCGkGGGAwrdkwwa
UP00627F_1 TwtTwmwATAmAwATAAwwtwkG
UP00627G_1 TwtTtawATAmAwATAAwwThkG
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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