DNA Binding Site
| Accessions: | GTCGTAAA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | GTCGTAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00121A (Homeobox domain) UP00133A (Homeobox domain) UP00134A (Homeobox domain) UP00140A (Homeobox domain) UP00173A (Homeobox domain, Homeobox KN domain) UP00180A (Homeobox domain) UP00183A (Homeobox domain) UP00197A (Homeobox domain) UP00207A (Homeobox domain) UP00213A (Homeobox domain) UP00217A (Homeobox domain) UP00264A (Homeobox domain) UP00503A (Homeobox domain) UP00597C (Homeobox domain, Homeobox KN domain) UP00597H (Homeobox domain) |
| Binding Motifs: | UP00140A_2 ywarGTCGTAAAawyht UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00133A_1 drvgGymATAAAayky UP00134A_1 mrmCyAATAAAAwwys UP00140A_5 wraryTAATTArytgkw UP00173A_1 wwwkCTCrTAAAawtw UP00140A_3 ywavGTCGTAAAatywt UP00140A_4 / UP00180A_1 mwwyyAATAAAAhymh UP00183A_1 / UP00264A_3 wwwbCTCGTAAAawtt UP00197A_1 rkagGTMATWAAyydk UP00207A_1 rrrgymATWAAAwycr UP00213A_1 rcggycATwAAAwtadw UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw UP00264A_2 waarGTCRTAAAayrk UP00264A_4 ctrarcTAATTAmyky UP00503A_1 ggrarrgGymATWAAattyhba UP00597C_1 hmdywrsCTCGTWAAatmwtwa UP00597C_2 yhgyarssTCGTAAAatywtma UP00597H_1 kksmrcyyAATAAAAwwmavtt |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.