DNA Binding Site
| Accessions: | ATAATAAA (UniPROBE 20160601), MA2158.1.7 (JASPAR 2024) |
| Organisms: | Mus musculus, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ATAATAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00121A (Homeobox domain) UP00133A (Homeobox domain) UP00135A (Homeobox domain) UP00140A (Homeobox domain) UP00177A (Homeobox domain) UP00217A (Homeobox domain) UP00240A (Homeobox domain) UP00264A (Homeobox domain) P20271 |
| Binding Motifs: | UP00140A_2 ywarGTCGTAAAawyht UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00133A_1 drvgGymATAAAayky UP00135A_1 ywrgGTCGTAAAwwywc UP00140A_5 wraryTAATTArytgkw UP00140A_3 / UP00177A_1 ywavGTCGTAAAatywt UP00140A_4 mwwyyAATAAAAhymh UP00264A_3 wwwbCTCGTAAAawtt UP00217A_1 / UP00264A_1 dmgGyMATWAAAtkmw UP00240A_1 wrmGGYmATWAAatkw UP00264A_2 waarGTCRTAAAayrk UP00264A_4 ctrarcTAATTAmyky MA2158.1 tTAATTAa |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Kagoshima H, Kohara Y. Co-expression of the transcription factors CEH-14 and TTX-1 regulates AFD neuron-specific genes gcy-8 and gcy-18 in C. elegans 399:325-36 (Dev). [Pubmed] |
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