Transcription Factor
| Accessions: | UP00096A (UniPROBE 20160601) |
| Names: | AA407916, AW259412, AW540933, Sox-13, SOX-13 protein, Sox13, SRY-box containing gene 13 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q04891 |
| Description: | SRY-box containing gene 13: nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100, mRNA (cDNA clone MGC:35934 IMAGE:3672913), complete cds |
| Length: | 101 |
| Pfam Domains: | 17-85 HMG (high mobility group) box 18-78 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 DMDGSRHFSESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTN 60 61 QEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCVVEGRRL |
| Interface Residues: | 19, 22, 24, 25, 28, 32, 43, 44, 45, 48, 86 |
| 3D-footprint Homologues: | 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 2lef_A, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 3tmm_A, 1hry_A, 3tq6_B, 1ckt_A |
| Binding Motifs: | UP00096A_1 wtwrgAACAATwwwtw UP00096A_2 rtrytGGgtGGGwawwt |
| Binding Sites: | AAAACAAT AAACAATT AACAATAA AACAATAT AACAATTA AACAATTG AATTAATA AATTGTCT ACAACAAT ACAATTAA ACAATTGT AGAACAAT AGACAATA ATTGTTCA ATTGTTCC ATTGTTCG ATTGTTTC GAACAATA TAACAATA ACAATAAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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