DNA Binding Motif

						

			
Accessions: UP00325A_1 (UniPROBE 20160601)

			
Names: Nhp6b, NHPB, Nonhistone chromosomal protein 6B, YBR089C-A, YBR090BC
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 20
Consensus: yttwyywwTATAwwwwrkdv
Weblogo: 
PSSM: P0      A      C      G      T
01   0.18   0.30   0.10   0.41      y
02   0.22   0.23   0.22   0.34      t
03   0.14   0.11   0.11   0.65      t
04   0.38   0.21   0.08   0.34      w
05   0.20   0.32   0.11   0.38      y
06   0.15   0.32   0.14   0.38      y
07   0.39   0.07   0.03   0.51      w
08   0.58   0.09   0.05   0.28      w
09   0.17   0.07   0.02   0.75      T
10   0.81   0.03   0.07   0.09      A
11   0.09   0.07   0.03   0.81      T
12   0.75   0.02   0.07   0.17      A
13   0.28   0.05   0.09   0.58      w
14   0.51   0.03   0.07   0.39      w
15   0.46   0.10   0.12   0.32      w
16   0.37   0.11   0.11   0.41      w
17   0.47   0.08   0.34   0.11      r
18   0.20   0.16   0.30   0.33      k
19   0.29   0.12   0.34   0.25      d
20   0.29   0.26   0.25   0.20      v
Binding TFs: UP00325A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: AATATAAT
AATATATA
AATTAATA
AATTATTA
ATAATAAT
ATAATTAA
ATATAATA
ATATATAA
ATATATTA
ATATTATA
ATTAATTA
TAATAATA
TAATATAA
TATATAAA
TATATATA
TATTAATA
TTAATTAA
TTATATAA
ACATTATA
ATAATGTA
			
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.