DNA Binding Site
| Accessions: | ATATAATA (UniPROBE 20160601) |
| Organisms: | Saccharomyces cerevisiae, Caenorhabditis elegans, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATATAATA |
| Type: | Heterodimer |
| Binding TFs: | UP00352A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00325A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00365A (Helix-loop-helix DNA-binding domain) UP00379A (Helix-loop-helix DNA-binding domain) UP00606B (Zinc finger, C4 type (two domains)) UP00627C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627F (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627G (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Motifs: | UP00325A_1 yttwyywwTATAwwwwrkdv UP00352A_1 mtkwhywmTATATAawwwwrh UP00365A_1 wswaTCACGTGAywawy UP00379A_1 ybtrvarwaaarwg UP00606B_1 wwmrrawtrAttwAtArtwmAAt UP00627C_1 TwtTwawATAmAwATAAwwThkG UP00627F_1 TwtTwmwATAmAwATAAwwtwkG UP00627G_1 TwtTtawATAmAwATAAwwThkG |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.