DNA Binding Motif
| Accessions: | UP00365A_1 (UniPROBE 20160601) |
| Names: | HLH-30 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | wswaTCACGTGAywawy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.39 0.18 0.17 0.26 w 02 0.22 0.25 0.31 0.22 s 03 0.36 0.11 0.21 0.31 w 04 0.62 0.04 0.24 0.11 a 05 0.06 0.06 0.05 0.83 T 06 0.01 0.97 0.01 0.02 C 07 0.95 0.01 0.01 0.03 A 08 0.01 0.85 0.01 0.13 C 09 0.13 0.01 0.85 0.01 G 10 0.03 0.01 0.01 0.95 T 11 0.02 0.01 0.97 0.01 G 12 0.83 0.05 0.06 0.06 A 13 0.01 0.63 0.01 0.35 y 14 0.36 0.22 0.15 0.27 w 15 0.39 0.19 0.18 0.24 a 16 0.28 0.10 0.22 0.40 w 17 0.21 0.25 0.24 0.29 y |
| Binding TFs: | UP00365A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AAATAATA AACACGTG ACACGTGA ACCACGTG AGCACGTG ATATAATA ATCACATG ATCACGTG ATTATTTA CACGTGAC CACGTGCA CATGTGAC CCACGTGA CTCGTGAC GCACGTGA GCACGTGC TATATATA TCACATGA TCACGTGA TCATATGA |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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