DNA Binding Motif
| Accessions: | UP00352A_1 (UniPROBE 20160601) |
| Names: | Nhp6a, NHPA, Nonhistone chromosomal protein 6A, YP9499.09C, YPR052C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | mtkwhywmTATATAawwwwrh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.31 0.28 0.21 0.20 m 02 0.24 0.22 0.08 0.46 t 03 0.24 0.15 0.31 0.30 k 04 0.38 0.21 0.15 0.26 w 05 0.29 0.33 0.10 0.28 h 06 0.10 0.52 0.05 0.33 y 07 0.34 0.13 0.07 0.46 w 08 0.49 0.25 0.06 0.19 m 09 0.11 0.02 0.01 0.86 T 10 0.90 0.01 0.03 0.06 A 11 0.13 0.03 0.01 0.84 T 12 0.85 0.02 0.04 0.09 A 13 0.06 0.04 0.03 0.87 T 14 0.75 0.02 0.02 0.22 A 15 0.65 0.03 0.15 0.17 a 16 0.38 0.14 0.14 0.35 w 17 0.38 0.14 0.14 0.35 w 18 0.42 0.11 0.17 0.30 w 19 0.29 0.15 0.12 0.43 w 20 0.31 0.15 0.31 0.22 r 21 0.33 0.29 0.10 0.28 h |
| Binding TFs: | UP00352A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | AATATAAT AATATATA ATAATAAT ATAATTAA ATATAATA ATATATAA ATATTATA ATTATATA CTATATAA TAATATAA TAATTATA TATATAAA TATATAGA TATATATA TTAATTAA TTATATAA ACTATAGT ATAGTATA ATTATTAA TATAGTAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.