DNA Binding Site
| Accessions: | TATATATA (UniPROBE 20160601) |
| Organisms: | Homo sapiens, Saccharomyces cerevisiae, Caenorhabditis elegans, Plasmodium falciparum |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | TATATATA |
| Type: | Heterodimer |
| Binding TFs: | UP00337A (Transcription factor TFIID (or TATA-binding protein, TBP)) UP00352A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00325A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00365A (Helix-loop-helix DNA-binding domain) UP00379A (Helix-loop-helix DNA-binding domain) UP00029A (Transcription factor TFIID (or TATA-binding protein, TBP)) UP00441A (AP2 domain) UP00594D (Homeobox domain) UP00595A (Homeobox domain) UP00595B (Homeobox domain) UP00595C (Homeobox domain) UP00599D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00624C (Homeobox domain) UP00626B (Homeobox domain) |
| Binding Motifs: | UP00029A_1 yywwwwTATAwwwmta UP00325A_1 yttwyywwTATAwwwwrkdv UP00337A_1 vwhtaGrwATATATAtwsrwd UP00352A_1 mtkwhywmTATATAawwwwrh UP00365A_1 wswaTCACGTGAywawy UP00379A_1 ybtrvarwaaarwg UP00029A_2 ccswtwwaasskabc UP00441A_1 mwwGmrwTWTATAWAdwmwkyC UP00594D_1 yagmhskaymwraawmsmcwaw UP00595A_1 TdanrbbrTAATTAytrywawww UP00595A_2 ttmyywrrTAATTAyyawtwwA UP00595B_2 ttmyyargTAATTAcydwtwwA UP00595C_1 TwasksyATAATTAtwGgtwkdr UP00595C_2 aakwywATaTATAyATwwhamw UP00599D_1 TamtwwTAATawATTAtbtwtm UP00624C_1 cwwrymcmTasyatatrwrktws UP00626B_1 ygwwwhwttTwATATagwaawaw |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.