DNA Binding Site
| Accessions: | TATTAATA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | TATTAATA |
| Type: | Heterodimer |
| Binding TFs: | UP00325A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00082A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00268A (Homeobox domain) UP00294A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00584B (Homeobox domain) UP00584E (Homeobox domain) UP00586E (Homeobox domain) UP00595A (Homeobox domain) UP00595C (Homeobox domain) UP00595D (Homeobox domain) UP00597A (Homeobox domain) UP00597F (Homeobox domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00082A_1 ytATGTACyAATwm UP00118A_1 wrtwATTAATkArkyc UP00268A_1 cgyddwtTAATTAawksgrm UP00294A_1 tkacctwtAATTawaybwsmw UP00325A_1 yttwyywwTATAwwwwrkdv UP00082A_2 grrmCCTtGTyCmywv UP00584B_2 wtwhtddkmTAATTAvmshwkrw UP00584E_1 tkacggwtTAATTAatywtckk UP00584E_2 wymdwkgkTAATTAwcmwatwaw UP00586E_1 cwgwwtAytsGGATTArgwrwv UP00595A_1 TdanrbbrTAATTAytrywawww UP00595A_2 ttmyywrrTAATTAyyawtwwA UP00595C_1 TwasksyATAATTAtwGgtwkdr UP00595D_1 dkwdwwATrTATAtATartrdv UP00597A_1 ykrsmthymATWAAawvcmgth UP00597F_1 tdccakmGTAyAAAAkwhawwr UP00597F_2 yksaakmGTAYAAAAtwmawwv UP00613B_1 aakrbywcTAATTAgwrcymsh UP00613B_2 ykwmrwctTAATTAaratysrr UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.